Table 1. Differentially expressed genes changed in the same direction in skeletal muscle of both the black bear and the arctic ground squirrel during torpor of hibernation.

Gene Symbol	Gene Name	Black Bear		Arctic Ground Squirrel
		P	Log2FC	P	Log2FC
Translation (13 genes)
Eif3k	Eukaryotic translation initiation factor 3 subunit K	0.006	0.995	0.012	0.630
Eif3m	Eukaryotic translation initiation factor 3 subunit M	0.020	0.876	0.030	1.021
Fxr1	Fragile X mental retardation syndrome- related protein 1	0.008	1.649	<0.001	0.871
Rpl23	60S ribosomal protein L23	0.013	0.826	<0.001	0.641
Rpl27	60S ribosomal protein L27	0.011	0.990	0.012	0.485
Rpl27a	60S ribosomal protein L27a	0.012	0.931	<0.001	0.619
Rpl8	60S ribosomal protein L8	0.021	0.389	0.005	1.354
Rps12	40S ribosomal protein S12	0.008	1.534	<0.001	0.767
Rps13	40S ribosomal protein S13	0.010	0.856	0.036	0.335
Rps15a	40S ribosomal protein S15a	0.011	0.713	<0.001	0.553
Rps23	40S ribosomal protein S23	0.008	1.099	0.004	0.630
Rps24	40S ribosomal protein S24	0.012	1.738	0.034	0.495
Rps27	40S ribosomal protein S27a	0.008	1.592	0.003	0.831
Oxidation Reduction (7 genes)
Adh4	Alcohol dehydrogenase 4	0.004	−0.505	0.022	−0.346
Aldh9a1	4-trimethylaminobutyraldehyde dehydrogenase	0.032	−1.538	0.015	−0.706
Atp5f1	ATP synthase subunit b, mitochondrial	0.030	−0.415	0.034	−0.727
L2hgdh	L-2-hydroxyglutarate dehydrogenase, mitochondrial	0.011	−0.622	0.003	−0.832
Ndufs1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	0.009	−0.514	0.041	−0.450
Nnt	NAD(P) transhydrogenase, mitochondrial	0.007	−0.756	0.007	−0.873
Phyh	Phytanoyl-CoA dioxygenase, peroxisomal	<0.001	−0.926	<0.001	−0.802
Other GO Categories (26 genes)
Acyp1	Acylphosphatase	0.014	0.794	0.002	0.827
Ankrd1	Ankyrin repeat domain-containing protein 1	0.020	1.580	0.005	3.273
Atp6v0d1	V-type proton ATPase subunit d 1	0.015	1.505	0.008	0.665
Caprin1	Caprin-1	0.012	0.533	0.010	0.390
Cebpz	CCAAT/enhancer-binding protein zeta	0.021	0.477	0.017	0.760
Cmya5	Cardiomyopathy-associated protein 5	0.026	1.48	0.016	0.512
Gbe1	1,4-alpha-glucan-branching enzyme	0.027	0.698	0.004	1.189
Gnb1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	0.040	0.598	0.042	0.347
Gnb2l1	Guanine nucleotide-binding protein subunit beta-2-like 1	0.013	0.353	<0.001	0.802
Maged2	Melanoma antigen, family D, 2	0.016	0.293	0.008	0.460
Ndrg2	NDRG family member 2	<0.001	1.223	<0.001	1.705
Nolc1	Nucleolar and coiled-body phosphoprotein 1	0.026	0.466	0.035	0.518
Peal5	Phosphoprotein enriched in astrocytes 15	0.029	0.342	0.014	1.202
Psmd13	Proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.012	0.570	0.047	0.609
Rb×1	Ring-box 1, E3 ubiquitin protein ligase	0.008	0.490	0.037	0.334
Sptbn1	Spectrin, beta, non-erythrocytic 1	0.008	1.318	0.027	0.608
Tomm20	Translocase of outer mitochondrial membrane 20 homolog (yeast)	0.009	0.617	0.008	0.656
App	Amyloid beta (A4) precursor protein	0.006	−0.556	0.042	−0.489
CdkS	Cyclin-dependent kinase 8	0.008	−0.579	0.005	−0.454
Ckm	Creatine kinase, muscle	0.029	−0.575	0.015	−0.889
Coq10b	Coenzyme Q10 homolog B (S. cerevisiae)	0.001	−0.664	0.023	−0.393
Dnm11	Dynamin 1-like	0.003	−0.483	0.013	−0.372
Kbtbd2	Kelch repeat and BTB (POZ) domain containing 2	0.015	−0.531	0.027	−0.452
Pdlim7	PDZand LIM domain 7	0.008	−0.642	0.006	−1.192
Tmeml26a	Transmembrane protein 126A	0.001	−0.436	0.004	−0.671
Usp10	Ubiquitin specific peptidase 10	<0.001	−0.805	0.001	−0.364