Table 3.
Differentially expressed genes between ACHK-NT and ACHK-T, including normalized read count of unigenes, expression fold change and non-redundant (NR) annotation. More information and annotations against other databases are shown in Supplementary Table S1.
| Gene_ID | N_Readcount | T_Readcount | log2.Fold_Change | NR Description |
|---|---|---|---|---|
| Down-regulation in ACHK-NT: | ||||
| comp66063_c0 | 2 | 37391.29 | −14.226 | exoglucanase 3 1,4-beta-cellobiohydrolase3 family GH6, Exoglucanase 3 (Pyrenophora tritici-repentis (strain Pt-1C-BFP)), Predicted CDS Pa_4_2420 (Podospora anserina) [Chondrus crispus] |
| comp66169_c0 | 1 | 12503.81 | −13.646 | SxtA long isoform precursor [Alexandrium fundyense] |
| comp57121_c1 | 3 | 15706 | −12.39 | putative uncharacterized protein [Sutterella wadsworthensis CAG:135] |
| comp66059_c0 | 3 | 3644.78 | −10.282 | hypothetical protein Pmar_PMAR010035 [Perkinsus marinus ATCC 50983] |
| comp47304_c0 | 15 | 4102.99 | −8.131 | cell wall-associated hydrolase [Burkholderia multivorans ATCC 17616] |
| comp57121_c0 | 0 | 4113 | −7.3658 | hypothetical protein Csp_D29540 [Curvibacter putative symbiont of Hydra magnipapillata] |
| comp62287_c0 | 28.75 | 3542.4 | −6.9805 | hypothetical protein, partial [Escherichia coli] |
| comp64637_c0 | 0 | 2734.05 | −6.7766 | enzymatic polyprotein; Endonuclease; Reverse transcriptase, putative [Pediculus humanus corporis] |
| comp46928_c0 | 15 | 1300.95 | −6.4739 | Protein CBR-LARP-1 [Caenorhabditis briggsae] |
| comp114480_c0 | 180 | 1354 | −2.9466 | putative S12 family peptidase [Gemmatimonas aurantiaca T-27] |
| comp66521_c0 | 11289.22 | 28698.06 | −1.3815 | Ankyrin repeats containing protein [delta proteobacterium BABL1] |
| comp60385_c0 | 2671.63 | 5630.9 | −1.1111 | -- |
| comp47283_c1 | 15773.39 | 25201.15 | −0.71144 | RecName: Full = Photosystem I P700 chlorophyll a apoprotein A2; AltName: Full = PSI-B; AltName: Full = PsaB |
| Up-regulation in ACHK-NT: | ||||
| comp64975_c0 | 119074.04 | 74056.39 | 0.64972 | cytochrome c oxidase subunit 1 [Alexandrium catenella] |
| comp65226_c1 | 19727.54 | 12087.19 | 0.67129 | light-harvesting protein, partial [Symbiodinium sp. clade C3] |
| comp54599_c0 | 40289.85 | 24201.67 | 0.69987 | -- |
| comp65353_c0 | 11048.61 | 6220.45 | 0.79333 | hypothetical protein NCLIV_047860 [Neospora caninum Liverpool] |
| comp63840_c0 | 8189.47 | 4453.25 | 0.84347 | probable high CO2 inducible periplasmic protein [Heterocapsa triquetra] |
| comp65627_c0 | 31244.01 | 16909.13 | 0.85033 | proliferating cell nuclear antigen [Alexandrium affine] |
| comp66053_c0 | 60305.52 | 30993.93 | 0.92486 | plastid C1 class II fructose bisphosphate aldolase [Heterocapsa triquetra] |
| comp66077_c1 | 8811.01 | 4410 | 0.96308 | hypothetical protein RFI_22066 [Reticulomyxa filosa] |
| comp65597_c0 | 8402.67 | 4024.29 | 1.0267 | hypothetical protein [Verrucomicrobiae bacterium DG1235] |
| comp65950_c0 | 5831.47 | 2682.38 | 1.0849 | PREDICTED: phosphoserine aminotransferase-like [Anolis carolinensis] |
| comp33299_c0 | 5150 | 2360 | 1.0903 | Eukaryotic translation initiation factor 3 subunit 9, putative [Eimeria acervulina] |
| comp70851_c0 | 2940.5 | 975 | 1.5571 | Calcium-dependent protein kinase, putative [Perkinsus marinus ATCC 50983] |
| comp71917_c0 | 2656.96 | 861 | 1.5902 | -- |
| comp62882_c0 | 14038.72 | 4456 | 1.6201 | SCO-spondin [Crassostrea gigas] |
| comp63141_c0 | 11545.27 | 3106 | 1.8587 | hypothetical protein Rcas_3705 [Roseiflexus castenholzii DSM 13941] |
| comp65143_c0 | 58658.95 | 11917.14 | 2.2639 | light-harvesting protein, partial [Symbiodinium sp. clade C3] |
| comp65099_c0 | 3250.62 | 428.7 | 2.8872 | Phosphoserine aminotransferase, putative [Perkinsus marinus ATCC 50983] |
| comp47128_c0 | 956.92 | 52 | 4.1664 | -- |
| comp64715_c0 | 1765.01 | 55 | 4.9687 | -- |
| comp57722_c1 | 872 | 0 | 5.0926 | -- |
| comp57938_c1 | 1421.88 | 19 | 6.1902 | S-adenosyl-homocysteine hydrolase like protein, partial [Alexandrium fundyense] |
| comp64901_c0 | 1290 | 10 | 6.9758 | -- |