Table 1.
Illumina HiSeq read processing and mapping results from RNA-seq petunia corolla libraries
| Treatment | Hap | Biological replicate | Sequencing lane | Index | Total reads | Processed reads | Unique counts | |
|---|---|---|---|---|---|---|---|---|
| 1 | Pollinated | 12 | 1 | 6 | ATCACG | 30832201 | 30141993 | 33039451 |
| 2 | Pollinated | 18 | 1 | 6 | TTAGGC | 25490151 | 25372935 | 29427524 |
| 3 | Pollinated | 24 | 1 | 6 | ACAGTG | 25117567 | 24877954 | 29517441 |
| 4 | Unpollinated | 12 | 1 | 6 | CGATGT | 30268558 | 28834631 | 30281445 |
| 5 | Unpollinated | 18 | 1 | 6 | TGACCA | 24763272 | 24641813 | 29090675 |
| 6 | Unpollinated | 24 | 1 | 6 | GCCAAT | 24371192 | 23570895 | 27670018 |
| 7 | Pollinated | 12 | 2 | 7 | ATCACG | 28373851 | 26976578 | 27909905 |
| 8 | Pollinated | 18 | 2 | 7 | TTAGGC | 11502467 | 11464155 | 13421728 |
| 9 | Pollinated | 24 | 2 | 7 | ACAGTG | 27673714 | 27592458 | 31866197 |
| 10 | Unpollinated | 12 | 2 | 7 | CGATGT | 29698309 | 28407270 | 29408647 |
| 11 | Unpollinated | 18 | 2 | 7 | TGACCA | 23585772 | 23489502 | 27520959 |
| 12 | Unpollinated | 24 | 2 | 7 | GCCAAT | 47030266 | 41469932 | 48764300 |
| 13 | Pollinated | 12 | 3 | 8 | ATCACG | 27800105 | 25311931 | 26148002 |
| 14 | Pollinated | 18 | 3 | 8 | TTAGGC | 24646831 | 24567933 | 28698650 |
| 15 | Pollinated | 24 | 3 | 8 | ACAGTG | 24659230 | 23812228 | 27191584 |
| 16 | Unpollinated | 12 | 3 | 8 | CGATGT | 23101938 | 21107740 | 21750346 |
| 17 | Unpollinated | 18 | 3 | 8 | TGACCA | 22719350 | 22563678 | 26873758 |
| 18 | Unpollinated | 24 | 3 | 8 | GCCAAT | 37127540 | 36912757 | 43177652 |
| All libraries | 488762314 | 471116383 |