Table 2.

Number of genes called significant according to Bonferroni correction and FDR q -values

	Bonferroni correction		q -value
		< 0.001	< 0.01	< 0.05
Up-regulated genes
Exact	25
Gamma	21	14	40	112
Upper bound	23	21	57	122
Geometric mean	25	21	58	129
Lower bound	26	21	59	131
Down-regulated genes
Exact	42
Gamma	30	23	69	140
Upper bound	42	39	74	143
Geometric mean	42	42	74	154
Lower bound	43	43	75	157