Table 3.
Chromosome | Original number of indels | Redundancy | Insertion redundancy | Indel size | Adjacent-SNP | Adjacent-indel | ||
---|---|---|---|---|---|---|---|---|
rate (%) a | rate (%) b | Shape c | Shape d | Rate e | Shape f | Rate g | ||
1 | 485270 | 9.63 | 47.99 | 1.44 | 0.83 | 0.016 | 0.39 | 7.55E-04 |
2 | 503609 | 9.57 | 48.18 | 1.43 | 0.86 | 0.016 | 0.4 | 7.57E-04 |
3 | 431820 | 9.38 | 47.57 | 1.47 | 0.89 | 0.017 | 0.4 | 8.03E-04 |
4 | 417942 | 9.98 | 48.62 | 1.47 | 0.89 | 0.017 | 0.39 | 7.82E-04 |
5 | 374774 | 9.49 | 47.06 | 1.46 | 0.88 | 0.017 | 0.4 | 7.53E-04 |
6 | 388741 | 10.16 | 48.14 | 1.43 | 0.84 | 0.017 | 0.39 | 7.99E-04 |
7 | 349376 | 9.68 | 48.38 | 1.43 | 0.86 | 0.017 | 0.4 | 7.96E-04 |
8 | 307212 | 9.55 | 48.56 | 1.47 | 0.88 | 0.018 | 0.4 | 7.72E-04 |
9 | 250802 | 9.29 | 49.25 | 1.45 | 0.82 | 0.016 | 0.4 | 7.37E-04 |
10 | 292264 | 9.58 | 48.23 | 1.42 | 0.85 | 0.017 | 0.39 | 7.82E-04 |
11 | 280673 | 9.6 | 47.66 | 1.46 | 0.87 | 0.017 | 0.4 | 7.72E-04 |
12 | 298606 | 9.65 | 48.73 | 1.45 | 0.87 | 0.017 | 0.4 | 8.16E-04 |
13 | 223181 | 10.31 | 46.21 | 1.39 | 0.9 | 0.017 | 0.38 | 7.95E-04 |
14 | 195779 | 9.8 | 49.23 | 1.46 | 0.88 | 0.017 | 0.4 | 7.94E-04 |
15 | 182417 | 9.77 | 48.87 | 1.44 | 0.85 | 0.016 | 0.4 | 7.86E-04 |
16 | 180020 | 9.41 | 50.29 | 1.39 | 0.81 | 0.018 | 0.4 | 8.09E-04 |
17 | 185888 | 10.03 | 51.8 | 1.4 | 0.83 | 0.016 | 0.4 | 8.40E-04 |
18 | 169830 | 10.02 | 48.61 | 1.41 | 0.89 | 0.017 | 0.4 | 8.07E-04 |
19 | 148904 | 9.93 | 53.31 | 1.39 | 0.81 | 0.018 | 0.41 | 9.69E-04 |
20 | 139927 | 10.54 | 51.3 | 1.4 | 0.88 | 0.018 | 0.39 | 8.16E-04 |
21 | 96577 | 9.3 | 49.52 | 1.45 | 0.85 | 0.018 | 0.4 | 9.83E-04 |
22 | 90621 | 10.31 | 50.46 | 1.33 | 0.83 | 0.018 | 0.39 | 8.77E-04 |
Mean | 5994233h | 9.77 | 49 | 1.43 | 0.86 | 0.017 | 0.4 | 8.09E-04 |
STD | 0.35 | 1.62 | 0.035 | 2.73E-02 | 7.61E-04 | 5.54E-03 | 6.21E-05 |
aThe total redundancy rate on individual chromosomes. bThe percentage of redundant insertions. cThe shape parameter of the Pareto distributions fitted to the indel sizes (after redundancy filtration). d,eThe shape and rate parameter estimates for the Gamma distributions fitted to the adjacent-SNP distances. f,gThe shape and rate parameter estimates for the Gamma distributions fitted to the adjacent-indel distances. hTotal number of indels studied.