Table 1.
De novo assembly statistics
| A | ||
|---|---|---|
| Data | Read counts & nucleotides (Gb) | |
| Total reads (4 libraries) | 184,515,960 (9.4) | |
| Matched | 156,818,896 (8.0) | |
| Not matched | 27,697,064 (1.4) | |
| Percent assembled | 85 | |
| B | ||
| Statistics of contigs | ||
| Contig number | 52,081 | |
| Max sequence size (nt) | 12,804 | |
| Min sequence size (nt) | 191 | |
| Average sequence size (nt) | 677 | |
| C | ||
| Contig length (nt) | Number of contigs | % |
| 100-499 | 30,739 | 59.02 |
| 500-999 | 11,326 | 21.75 |
| 1,000-1,999 | 7,435 | 14.28 |
| 2,000-4,999 | 2,457 | 4.72 |
| 5,000-9,999 | 120 | 0.23 |
| > = 10,000 | 4 | 0.01 |
| Total contig number | 52,081 | 100.00 |
(A) Clean reads from all four libraries, pooled together, were used for the de novo re-assembly of the Iberis petal transcriptome. (B) Statistics of re-assembled contigs. (C) All contigs of the stage A1 Iberis amara petal transcriptome are classified into categories according to their nucleotide length. For each category, respective contig numbers and percentage of the total contig number are given. Gb, giga basepairs; nt, nucleotides.