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. 2014 Oct 7;42(21):e161. doi: 10.1093/nar/gku864

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 9. — Comparison of differential expression results for ReCount experiment. (a) A concordance at the top plot measuring concordance between the analysis using the true study and the various other batch estimates analogous to Figure 6. (b) A concordance at the top plot measuring concordance between the analysis using the true study and the various other batch estimates analogous to Figure 6 when data were resampled to make the sex and study variables moderately correlated (r² = 0.33.) When sex and study are uncorrelated, RUV performs slightly better and when sex and study are correlated, svaseq performs slightly better. Additional details at http://jtleek.com/svaseq/recount.html.