Table 1.
Software | Newbler 2.8 | WGS-CA 7.0 | Minimus2/Consed |
---|---|---|---|
Scaffolds | 191 | 516 | - |
Total scaffold size (bp) | 38,326,054 | 38,454,426 | - |
Contigs | 677 | 688 | 376* |
Total contig size (bp) | 38,369,953 | 38,434,596 | 38,478,534 |
Scaffold N50 | 622,803 | 167,523 | - |
Contig N50 | 157,963 | 125,686 | 319,537 |
Longest scaffold | 1,756,362 | 638,367 | - |
Longest contig | 735,175 | 638,367 | 1,044,648 |
Coverage | 19 X | 19.6 X | - |
Singlets | 3,552 | 39,616 | - |
*A total of 366 contigs larger than 200 base pairs were deposited in NCBI with the accession number JNNZ00000000.