Table 1.
Summary of transcriptome analysis.
| S. No. | Query type | Genes | Exons | |
|---|---|---|---|---|
| 1 | Analysis type | Gene level differential expression analysis | Exon level differential expression analysis | |
| 2 | Array Type | AraGene-1_0-st | ||
| 3 | Genome version | tair10 | ||
| 4 | Annotation file | aragene-1_0-st-v1.na33.3.tair10.transcript.csv | aragene-1_0-st-v1.na33.3.tair10.transcript.csv | |
| aragene1_0-st-v1.na33.2.tair10.probeset.csv | ||||
| 5 | Total number | 28403 | 171941 | |
| 6 | Differentially expressed | 704 | 4900 | |
| 7 | Up regulated (Exp. Vs. Con) | 492 | 2690 | |
| 8 | Down regulated (Exp. Vs. Con) | 212 | 2210 | |
| 9 | Algorithm | One-Way between-subject ANOVA (unpaired) | ||
| 10 | Default filter criteria 1 | Fold change (linear) < -2 or fold change (linear) > 2 | ||
| 11 | Default filter criteria 2 | ANOVA p-value (condition pair) < 0.05 |