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. 2014 Nov 28;5:668. doi: 10.3389/fpls.2014.00668

Table 2.

Gene ontology for genes with differential transcript abundance.

BIN code “S” “T” “T”/”S”* MapMan classification
35 197 232 1.18 Not assigned, no ontology/unknown*
29 114 142 1.25 Protein, aa activation/synthesis/targeting/postranslational modification/degradation/folding/glycosylation/assembly and cofactor ligation
27 77 91 1.18 RNA, processing/transcription/regulation of transcription/RNA binding/
26 31 37 1.19 Misc
34 30 37 1.23 Transport, p- and v-ATPases/metal/peptides and oligopeptides/unspecified cations/potassium/ABC transporters and multidrug resistance systems/unspecified anions/Major Intrinsic
Proteins/sugars/porins/cyclic nucleotide or calcium regulated channels/amino acids/H+ transporting pyrophosphatase/ammonium/sulfate/metabolite transporters at the envelope membrane/metabolite transporters at the mitochondrial membrane/misc
20 31 35 1.13 Stress, biotic/abiotic
30 27 37 1.37 Signaling, in sugar and nutrient physiology/light/receptor kinase/calcium/phosphinositides/G-proteins/MAP kinases/14-3-3 proteins/misc/lipis/
31 30 25 0.83 Cell, organization/division/cycle/vesicle transport
28 31 19 0.61 DNA, synthesis/repair/unspecified
1 9 29 3.22 PS, lightreaction/photorespiration/calvin cycle
33 16 22 1.38 Development, storage proteins/late embryogenesis abundant/squamosa promoter binding like (SPL)/unspecified
11 15 18 1.20 Lipid metabolism, FA synthesis and FA elongation/glycolipid synthesis/FA desaturation/Phospholipid synthesis/TAG synthesis/lipid transfer proteins/unassigned/exotcs/lipid degradation
13 13 19 1.46 Amino acid metabolism, synthesis/degradation
10 22 7 0.32 Cell wall, cellulose synthesis/hemicellulose synthesis/call wall proteins/degradation/modification/pectin esterases
16 10 19 1.90 Secondary metabolism, isoprenoids/phenylpropanoids/N misc.alkaloid-like/sulfur-containing/flavonoids
17 12 10 0.83 Hormone metabolism, abscisic acid/auxin/brassinosteroid/cytokinin/gibberelin/salicylic acid
23 9 9 1.00 Nucleotide metabolism, synthesis/degradation/salvage/phosphotransfer and pyrophosphatases/deoxynucleotide metabolism
9 1 15 15.0 Mitochondrial electron transport / ATP synthesis, NADH-DH/electron transfer flavoprotein/cytochrome c reductase/cytochrome c/cytochrome c oxidase/F1-ATPase
3 7 7 1.00 Minor CHO metabolism, others/raffinose family/trehalose/myo-inositol/callose/sugar kinases/galactose
21 4 10 2.50 Redox, thioredoxin/ascorbate/glutaredoxins
8 5 7 1.40 TCA / org transformation, TCA/other organic acid transformatons
4 4 5 1.25 Glycolysis, cytosolic branch/plastid branch
2 4 1 0.25 Major CHO metabolism, synthesis.starch/ degradation.starch
18 3 2 0.67 Co-factor and vitamine metabolism, molybdenum cofactor/lipoic acid/riboflavin/folate
19 3 2 0.67 Tetrapyrrole synthesis, glu-tRNA synthetase/protochlorophyllide reductase/heme oxygenase/regulation/unspecified
7 3 1 0.33 OPP, oxidative PP
5 1 2 2.00 Fermentation, aldehyde dehydrogenase/PDC
12 2 1 0.50 N-metabolism, ammonia metabolism/N-degradation/misc
15 1 2 2.00 Metal handling, acquisition/binding
14 1 1 1.00 S-assimilation, AKN/APR
24 1 1 1.00 Biodegradation of Xenobiotics
32 0 2 Inf Micro RNA, natural antisense etc
6 1 0 0.00 Gluconeogenesis / glyoxylate cycle.Malate DH
22 1 0 0.00 Polyamine metabolism
25 1 0 0.00 C1-metabolism

For each MapMan category (BIN) the number of genes up-regulated in accession 3170 (“T”) and up-regulated in accession 3231 (“S”) is given.

*

(number of T-calls)/(number of “S” calls); ratio<0.5 and ratio>2 is indicated in bold. See also Supplementary Table 3A. *BIN classification, 2nd level sub-BIN's of a gene set are listed separated by “/”).