Table 3.
Twenty seven reactions for which change in gene expression correlates with difference in flux between accessions 3170 and 3231.
| index | Abbreviation; name | Lower/upper flux bound responsiveness | Reaction level differential expression |
|---|---|---|---|
| 26 | PFK_c;phosphofructokinase | N;S | (S)()()()()* |
| 55 | RPI_p;ribose-5-phosphate isomerase | T;T | (T)() |
| 93 | PiC_c_m;phosphate carrier | T;T | ()()(T) |
| 95 | H_PYR_sym_c_p;pyruvate transport | T;T | (T) |
| 252 | ADEK_c;adenosine kinase | T;T | ()(T) |
| 255 | SHMT_c;glycine hydroxymethyltransferase | T;T | ()()(X)()()(TT) |
| 284 | ABUTsynth_p;acetolactate synthase | T;T | (T)()() |
| 294 | IPMDY_p;3-isopropylmalate dehydratase | T;T | (TT)()(X)(T) |
| 295 | IPMD_p;3-isopropylmalate dehydrogenase | T;T | (X)(T)() |
| 312 | ACLACsynth_p;acetolactate synthase | T;T | (T)()() |
| 318 | ASUCS_p;adenylosuccinate synthase | T;T | (T) |
| 320 | IMPsynth_p;IMP cyclohydrolase | T;T | (T) |
| 333 | Phesynth_p;arogenate dehydratase | T;T | ()()()()(X)(TT) |
| 335 | HOM_p;homoserine dehydrogenase | T;T | ()(TT) |
| 337 | AK_p;aspartate kinase | T;T | ()()(TT)()() |
| 340 | DHS_p;3-deoxy-7-phosphoheptulonate synthase | T;T | (TT)()() |
| 344 | starchsynth_p;starch synthase | S;S | ()()(S)(SSS)(SS)()()()() |
| 348 | PURH_p;phosphoribosylaminoimidazolecarboxamide formyltransferase | T;T | (T) |
| 355 | Glysynth_p;glycine hydroxymethyltransferase | T;T | ()()(X)()(T)()(TT) |
| 357 | IGLPS_p;indole-3-glycerol-phosphate synthase | T;T | ()(T) |
| 361 | Thrsynth_p;threonine synthase | T;T | ()(TT) |
| 456 | SUCLA_m;Succinate-CoA ligase (ADP-forming) | T;T | ()(T)() |
| 458 | GDC2_m;aminomethyltransferase | S;S | (S) |
| 499 | ACCase_c;acetyl-CoA carboxylase | T;T | (T) |
| 541 | PDHa_m;dihydrolipoyllysine-residue acetyltransferase | S;S | (S)(S)() |
| 576 | CMK_p;4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1 | T;T | (T) |
| 621 | DHCRed_c;7-dehydrocholesterol reductase | T;T | (TTTT) |
Flux Variability Analysis for 3170 and 3231 (loopless algorithm) using flux ratios and flux constraints derived from 13C-Metabolic Flux Analysis.
*
transcript level significance calls are aggregated at the gene level in parentheses. “(X)” means that no associated transcripts were found for an Arabidopsis gene identifier in bna572+. See also Supplementary Table 3B.