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. 2014 Nov 18;15(1):993. doi: 10.1186/1471-2164-15-993

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© Hwang et al.; licensee BioMed Central Ltd. 2014

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Gene phylogeny of nuclear receptors in T. japonicus and other related species. Phylogenetic distance was calculated with combined DBD-LBD amino acid sequences from T. japonicus and other species. A best-fit substitution model was established using maximum likelihood (ML) analysis supported by MEGA (ver.6.0). Numbers at nodes represent ML bootstrap support values and Bayesian posterior probabilities (=1.00). Details of model testing and parameters are provided in the Methods section. Tree is proportionally scaled, with the scale bar indicating sequence distance as number of substitutions. Species abbreviations: Ce: Caenorhabditis elegans, Dm: Drosophila melanogaster, Dp: Daphnia pulex, Dr: Danio rerio, Gg: Gallus gallus, Hs: Homo sapiens, Tj: Tigriopus japonicus, Xl: Xenopus laevis.