Table 3.
Differentially expressed secondary cell wall genes
| FPKM | ||||||
|---|---|---|---|---|---|---|
| Gene ID | Annotation | CT | CH | NAR | CHSTOP | NARSTOP |
| Eucgr.C03199.1 | SUS4 | 1,532.75 | 66.91* | 100.38* | 132.04 | 213.15 |
| Eucgr.C01715.1 | SPS1F | 3.32 | 63.28* | 54.72 | 35.80* | 28.00 |
| Eucgr.F00464.1 | SUT4 | 28.18 | 85.70 | 85.04 | 82.49* | 36.89 |
| Eucgr.D01765.2 | CSLG3 | 0.07 | 3.26 | 6.28* | 7.07* | 1.24 |
| Eucgr.F04010.1 | CSLC05 | 7.51 | 0.11* | 0.35 | 0.47* | 3.06 |
| Eucgr.J00420.1 | CSLA2 | 41.08 | 2.63* | 5.07* | 5.87* | 25.59 |
| Eucgr.E00226.1 | CSLD3 | 10.13 | 0.53 | 0.78 | 0.68 | 2.11 |
| Eucgr.E00821.1 | CSLG2 | 3.07 | 0.38* | 0.35 | 0.78* | 3.03 |
| Eucgr.J02497.1 | AMR1 | 1.00 | 5.25 | 6.14 | 6.11* | 2.68 |
| Eucgr.J02407.1 | MUR1 | 74.28 | 18.89 | 17.82 | 19.95* | 38.28 |
| Eucgr.B03204.1 | MUR2 | 13.62 | 55.51 | 54.92 | 47.91* | 32.70 |
| Eucgr.J01663.1 | XTH5 | 97.41 | 1.21* | 1.87* | 3.31* | 75.71 |
| Eucgr.B03348.1 | XTH33 | 26.89 | 0.21 | 0.15* | 0.07* | 9.47 |
| Eucgr.K00883.2 | XTH9 | 607.60 | 16.06* | 29.74 | 37.61* | 288.85 |
| Eucgr.C00184.1 | XTH23 | 45.26 | 0.45 | 0.72* | 0.22* | 37.20 |
| Eucgr.H02634.1 | XTH16 | 386.73 | 21.78* | 47.14 | 72.69 | 396.09 |
| Eucgr.D01294.1 | XTH8 | 10.82 | 1.01 | 1.54 | 1.66* | 7.36 |
| Eucgr.J00827.1 | GSL12 | 0.04 | 0.90* | 1.56* | 0.98* | 0.76* |
| Eucgr.A02002.1 | GSL7 | 0.20 | 1.24 | 2.13 | 1.38* | 0.79 |
| Eucgr.A02008.1 | GSL7 | 0.16 | 1.07 | 1.89 | 1.66* | 0.83 |
| Eucgr.K02988.2 | GH | 16.20 | 90.51* | 69.09* | 53.94 | 47.27* |
| Eucgr.H00494.1 | PWD | 6.13 | 20.24 | 26.24* | 27.22 | 7.21 |
| Eucgr.H03767.1 | BAM9 | 39.25 | 225.21 | 235.09* | 217.12 | 115.07 |
| Eucgr.E00460.1 | TPS | 0.08 | 5.75* | 6.21* | 4.26 | 0.34 |
| Eucgr.K00387.1 | SS | 9.88 | 66.76* | 54.46* | 39.19 | 19.93 |
| Eucgr.C04266.1 | RafS | 26.09 | 1,317.97* | 1007.17 | 544.49 | 193.24 |
| Eucgr.K03553.1 | STS | 0.04 | 4.11* | 4.59* | 2.83* | 6.87* |
| Eucgr.H00997.1 | STS | 0.81 | 37.45* | 29.83* | 17.09* | 7.06* |
| Eucgr.K03563.1 | GoSL1 | 0.23 | 4.48 | 11.12* | 12.00 | 8.48* |
| Eucgr.L00249.1 | GoSL2 | 0.34 | 280.16* | 135.36* | 52.37* | 1.25 |
| Eucgr.L00243.1 | GoSL2 | 0.02 | 29.83* | 19.77* | 9.75* | 1.37* |
| Eucgr.L00251.1 | GoSL2 | 0.21 | 325.56* | 149.21* | 61.46* | 3.38 |
| Eucgr.L03245.1 | GoSL2 | 0.07 | 190.81* | 124.71* | 44.86* | 2.79* |
| Eucgr.L00240.1 | GoSL2 | 0.02 | 34.50* | 22.77* | 10.27* | 0.66 |
| Eucgr.L00248.1 | GoSL2 | 0.17 | 162.07* | 86.93* | 32.28* | 0.69 |
| Eucgr.L03244.1 | GoSL2 | 0.12 | 279.83* | 137.40* | 63.66* | 2.99* |
| Eucgr.L00235.1 | GoSL2 | 0.04 | 73.19* | 38.88* | 15.60* | 0.03 |
| Eucgr.L00245.1 | GoSL2 | 1.83 | 287.87* | 164.66 | 80.81* | 5.28 |
| Eucgr.F01661.1 | Invertase | 0.15 | 2.82* | 2.16 | 2.39* | 1.33 |
| Eucgr.J00457.2 | Invertase | 5.69 | 47.20* | 42.83 | 33.08* | 18.78 |
| Eucgr.G01751.1 | Invertase | 4.83 | 0.23* | 0.42 | 1.17* | 2.23 |
| Eucgr.A02888.1 | Invertase | 7.36 | 0.04* | 0.08* | 0.08* | 1.55 |
FPKM -fragments per kilobase of exon per million fragments mapped. CT – control; CH – prolonged naringenin-chalcone supp; NAR – prolonged naringenin supp; CHSTOP- short-term naringenin-chalcone supp; NARSTOP – short-term naringenin sup *Denotes differential expression.
Abbreviations: Sus4 sucrose synthase 4, SPS1F sucrose phosphate synthase 1 F, SUT4 sucrose transporter 4, CSLG3 cellulose synthase like G3, CSLD3 cellulose synthase-like D3, CSLC05 Cellulose-synthase-like C5, CSLA2 cellulose synthase-like A02, CSLG2 cellulose synthase like G2, CSLG3 cellulose synthase like G3, CESA3 cellulose synthase family protein, AMR1 ascorbic acid mannose pathway regulator 1, MUR1 GDP-mannose 4,6 dehydratase 2, MUR2 fucosyltransferase 1, XTH5 xyloglucan endotransglucosylase/hydrolase 5, XTH33 xyloglucosyl transferase 33, XTH9 xyloglucan endotransglucosylase/hydrolase 9, XTH23 xyloglucan endotransglycosylase 6, XTH16 xyloglucan endotransglucosylase/hydrolase 16, XTH8 xyloglucan endotransglucosylase/hydrolase 8, GSL12 glucan synthase-like 12, GSL7 glucan synthase-like 7, GH glycoside hydrolase, PWD phosphoglucan water dikinases, BAM9 beta-amylase 9, TPS trehalose-6-phosphate synthase, SS starch synthase, Rafs raafinose synthase, STS stachyose synthase, GoSL1 galactinol synthase 1, GoSL2 galactinol synthase 2.