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. 2014 Dec;196(23):4057–4070. doi: 10.1128/JB.01907-14

TABLE 3.

Genes differentially expressed in FLL366 under both anaerobic and hydrogen peroxide stress conditions

Gene ID Annotation HPSa
ANb
Fold change P value Fold change P value
Downregulated
    PG_0061 YngK protein −1.61 0.000426 −1.53 6.7E−17
    PG_0195 Rubrerythrin −2.01 0.002247 −1.66 0.00278
    PG_0548 Pyruvate ferredoxin/flavodoxin oxidoreductase family protein −2.77 0.000341 −1.64 1.5E−09
    PG_0682 ABC transporter, permease protein, putative −1.50 0.019527 −1.67 1.4E−17
    PG_0683 ABC transporter, permease protein, putative −1.75 0.001568 −1.74 1.1E−13
    PG_1006 Hypothetical protein PG1006 −1.50 0.006456 −1.75 1.5E−22
    PG_1172 Iron-sulfur cluster binding protein, putative −3.41 0.000149 −1.59 7.2E−08
    PG_1173 YkgG family protein −1.96 0.000406 −1.52 7E−08
    PG_1214 Hypothetical protein PG1214 −2.14 0.00121 −1.64 1.8E−22
    PG_1392 Rod shape-determining protein RodA, putative −1.62 0.001405 −1.63 5.5E−14
    PG_1393 Penicillin-binding protein 2, putative −1.59 0.000734 −1.83 3.8E−17
    PG_1402 Rhomboid family protein −1.53 0.003675 −1.63 2.9E−11
    PG_1734 Transporter, putative −1.62 0.003835 −1.66 3.1E−11
    PG_1738 Hypothetical protein PG1738 −1.85 0.006191 −1.55 8.7E−13
    PG_1778 Hypothetical protein PG1778 −1.51 0.016187 1.55 4.1E−13
    PG_1812 2-Ketoisovalerate ferredoxin reductase −1.20 4.66E−05 −1.57 0.03345
Upregulated under AN but downregulated under HPS conditions
    PG_0689 NAD-dependent 4-hydroxybutyrate dehydrogenase −1.74 0.00621 1.55 1.8E−08
    PG_0691 NifU-related protein −1.52 0.011859 1.50 6E−07
Upregulated
    PG_0329 Formiminotransferase-cyclodeaminase-related protein 1.51 0.195903 1.81 4.4E−12
    PG_0330 Histone-like family DNA-binding protein 1.50 0.08439 1.72 4.5E−10
    PG_0495 Hypothetical protein PG0495 5.57 1.4E−05 2.38 0.00565
    PG_0592 50S ribosomal protein L31 type B 1.76 0.014037 1.83 3.3E−16
    PG_0612 Hypothetical protein PG0612 2.01 7.83E−05 1.50 3.2E−13
    PG_0686 Hypothetical protein PG0686 2.66 0.000614 1.68 1.2E−12
    PG_0707 TonB-dependent receptor, putative 2.69 7.8E−05 2.56 5.6E−17
    PG_0985 ECF subfamily RNA polymerase sigma factor 3.68 0.000346 1.99 2.8E−16
    PG_0986 Hypothetical protein PG0986 4.84 1.61E−05 1.89 5.8E−16
    PG_0987 Hypothetical protein PG0987 5.40 1.51E−05 1.83 8.5E−15
    PG_1019 Putative lipoprotein 14.88 4.43E−06 2.75 0.02315
    PG_1108 Hypothetical protein PG1108 1.61 0.004065 2.13 1E−07
    PG_1178 Hypothetical protein PG1178 9.23 1.62E−05 2.82 0.04231
    PG_1179 Hypothetical protein PG1179 11.44 4.76E−05 2.53 0.04907
    PG_1180 Hypothetical protein PG1180 11.06 1.53E−05 1.86 0.00836
    PG_1181 Tetr family transcriptional regulator 4.73 9.09E−05 1.52 0.00481
    PG_1236 Hypothetical protein PG1236 4.09 1.43E−06 2.81 2.5E−06
    PG_1237 LuxR family transcriptional regulator 4.54 1.08E−05 3.42 3.3E−06
    PG_1240 TetR family transcriptional regulator 2.62 0.000192 1.67 7.6E−12
    PG_1268 Hypothetical protein PG1268 3.77 0.000276 2.40 7.8E−14
    PG_1315 Peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type 1.65 0.007939 2.04 4.5E−11
    PG_1316 Hypothetical protein PG1316 1.52 0.025092 1.84 9.1E−11
    PG_1497 Histone-like family DNA-binding protein 1.65 0.069685 2.12 1.1E−09
    PG_1551 HmuY protein 4.82 0.000105 2.04 0.00261
    PG_1552 TonB-dependent receptor HmuR 4.26 0.000935 2.17 0.00173
    PG_1553 CobN/magnesium chelatase family protein 4.41 3.18E−05 2.25 0.02276
    PG_1625 Hypothetical protein PG1625 4.72 2.63E−06 1.78 1.8E−08
    PG_1659 Hypothetical protein PG1659 1.76 0.009558 1.89 3.2E−20
    PG_1755 Fructose-1,6-bisphosphate aldolase 1.75 0.000758 1.80 1E−10
    PG_1798 Immunoreactive 46-kDa antigen PG99 3.07 0.000153 1.61 3.1E−06
    PG_1856 Cytidine/deoxycytidylate deaminase family protein 3.22 0.000332 1.83 0.00143
    PG_1857 Hypothetical protein PG1857 5.19 0.000125 1.69 0.00514
    PG_1858 Flavodoxin FldA 4.26 1.95E−05 2.65 0.10882
a

HPS, hydrogen peroxide stress.

b

AN, anaerobic conditions.