TABLE 3.
Patient strain designation | wk of diagnosis in 2013 | No. of viral genomes/ml in patient sample | Genotype | Similar strain | wk detected in sewage |
---|---|---|---|---|---|
861-13 | 3 | 5.9 × 104 | IB | Outbreak strain | 9 |
Sewage strain w5 | IB | Strain from Iraq | 5 | ||
985-13 | 10, 11c | 0.7 × 104 | IB | Outbreak strain | 7 |
2926-13 | 12 | 0.3 × 104 | NDb | Could not be sequenced | |
6033-13 | 13 | 123 × 104 | IA | Outbreak strain in Hungary/The Netherlands, 2012 | Not found in sewage |
8723-13 | 19 | 1 × 104 | IB | Outbreak strain | 7 |
The designation, amount of viral genomes/ml sample, and genotypes of HAV in samples from patients with the indicated week for HAV diagnosis in Gothenburg are given, together with the genotype of one strain found only in sewage in week 5. In addition, the nucleotide similarity of the strains to other HAV strains is listed, along with the week when the strain was also found in sewage.
ND, not determined.
Last week of sampling.