TABLE 3.
Nucleotide and amino acid identities between the different known primate roseoloviruses on the basis of the complete DNA polymerase gene sequence
| Virus | GenBank accession no. | % identity with: |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PtroHV7v. |
PtroHV7e. |
PtroHV7t. |
PtroHV7s. |
PpanHV7 |
GgorHV7 |
||||||||
| Nucleotide | Amino acid | Nucleotide | Amino acid | Nucleotide | Amino acid | Nucleotide | Amino acid | Nucleotide | Amino acid | Nucleotide | Amino acid | ||
| PtroHV7v. | KJ843227, KJ843237 | 99.9 | 100 | 98.3 | 98.3–98.5 | 98.4 | 98.7 | 98.6 | 98.7 | 94.8–94.9 | 96 | 86.7–86.8 | 89.6 |
| PtroHV7e. | KJ843233, KJ843235, KJ843236 | 98.3 | 98.3–98.5 | 99.9–100 | 99.9–100 | 99.1 | 99–99.1 | 99.2 | 99–99.1 | 95.1–95.2 | 96.3–96.4 | 87.1–87.2 | 89.9–90 |
| PtroHV7t. | KJ843234, KJ843244 | 98.4 | 98.7 | 99.1 | 99–99.1 | 99.8a | 100a | 99.6 | 99.6 | 95.4–95.5 | 96.9 | 87.2–87.3 | 90.1 |
| PtroHV7s. | KJ843228, KJ843238, KJ843239, KJ843240 | 98.6 | 98.7 | 99.2 | 99–99.1 | 99.6 | 99.6 | 100 | 100 | 95.4–95.6 | 96.7 | 87.3–87.4 | 90.2 |
| PpanHV7 | KJ843229, KJ843230, KJ843241 | 94.8–94.9 | 96 | 95.1–95.2 | 96.3–96.4 | 95.4–95.5 | 96.9 | 95.4–95.6 | 96.7 | 99.9–100 | 100 | 86.5–86.6 | 89.4 |
| GgorHV7 | KJ843231, KJ843232, KJ843242, KJ843243 | 86.7–86.8 | 89.6 | 87.1–87.2 | 89.9–90 | 87.2–87.3 | 90.1 | 87.3–87.4 | 90.2 | 86.5–86.6 | 89.4 | 99.9–100 | 100 |
| HHV7 strain RK | AF037218 | 86.5 | 90.6 | 86.4–86.5 | 90.6–90.7 | 86.4 | 90.7 | 86.5 | 90.7 | 86–86.2 | 90.1 | 85.8–85.9 | 89.2 |
| HHV7 strain JI | U43400 | 86.4 | 90.5 | 86.3–86.4 | 90.5–90.6 | 86.4 | 90.6 | 86.5 | 90.6 | 86–86.2 | 90 | 85.7–85.8 | 89.1 |
| HHV6A strain U1102 | X83413 | 64.9 | 66.3 | 64.9–65 | 66.5–66.6 | 64.7 | 66.5 | 64.7 | 66.4 | 64.4 | 66.8 | 64.9–65 | 66.7 |
| HHV6B strain Z29 | AF157706 | 64.8 | 66.5 | 64.8–64.9 | 66.7–66.8 | 64.6 | 66.7 | 64.6 | 66.6 | 64.6 | 66.9 | 65–65.1 | 67 |
| HHV6-B strain HST | AB021506 | 64.8–64.9 | 66.5 | 64.9 | 66.7–66.8 | 64.7 | 66.7 | 64.7 | 66.6 | 64.7 | 66.9 | 65.1 | 67 |
| Pan troglodytes herpesvirus 6b | AY359407 | 66.1 | 70.6 | 66.2–66.3 | 70.6–70.9 | 66.3 | 70.9 | 66.3 | 70.9 | 65.5 | 70.6 | 65.8 | 71.3 |
| Pan troglodytes roseolovirus 1c | AY854171 | 65.8 | 66.8 | 65.7–65.8 | 66.8–67 | 65.7 | 66.8 | 65.8 | 66.8 | 65.5–65.6 | 67.2 | 65.6–65.7 | 67.2 |
| MndHVβd | AF282942 | 58.8–59 | 62.3 | 58.4–58.6 | 60.3–61 | 59.4 | 62.3 | 58.8 | 62.2 | 59.2 | 62.3 | 60.5 | 62.3 |
a
Numbers refer to values obtained by comparing the common 1,298-bp/432-aa sequences of PtroHV7 obtained from two P. t. troglodytes individuals.
b
Comparison with the PanHV6 sequence was performed only on the basis of the 883-bp/294-aa common fragments.
c
The comparison with these viral strains was performed on the basis of the common 2,214-bp/738-aa fragments.
d
The comparison with these viral strains was performed only on the basis of the common 478-bp/160-aa common fragments.