TABLE 2.
Relative proportion of the phylotypes (OTU97, >1%) for passage 4 samplesa
| Taxon | Phylotype | Proportion in: |
BLAST hit (% identity) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Untreated switchgrass |
AFEX-pretreated switchgrass |
IL-pretreated switchgrass |
|||||||||
| Rep. 1 | Rep. 2 | Rep. 3 | Rep. 1 | Rep. 2 | Rep. 3 | Rep. 1 | Rep. 2 | Rep. 3 | |||
| Bacteroidetes | OTU97_1 | 40.1 | 40.8 | 32.6 | 0.78 | 29.4 | 3.6 | 49.9 | 52.3 | 75.8 | Crenotalea thermophila STH-1-Y1 (99) |
| OTU97_9 | 6.67 | 6.48 | 3.91 | 14.56 | 3.18 | 25.11 | 0 | 0 | 0 | Rhodothermus marinus SG0.5JP17-172 (100) | |
| Firmicutes | OTU97_3 | 17.2 | 22.0 | 19.5 | 14.6 | 18.12 | 29.2 | 13.5 | 15.8 | 0.93 | Thermobacillus composti KWC4 (97) |
| OTU97_4 | 3.46 | 6.67 | 3.81 | 9.1 | 0.88 | 9.15 | 6.61 | 7.41 | 4.36 | Paenibacillus kobensis NBRC 15730 (96) | |
| OTU97_41 | 0.52 | 0.79 | 0.37 | 2.25 | 0.35 | 1.14 | 0.28 | 0.82 | 0.34 | Thermobacillus composti KWC4 (100) | |
| OTU97_47 | 0.05 | 0.03 | 0.01 | 0.96 | 0.73 | 0.51 | 0.02 | 0.1 | 0.13 | Geobacillus stearothermophilus CICC 10392 (100) | |
| Deinococcus-Thermus | OTU97_2 | 12.4 | 9.42 | 0.9 | 16.67 | 23.6 | 9.89 | 1.76 | 1.06 | 1.09 | Truepera radiovictrix RQ-24 (93) |
| OTU97_7 | 7.91 | 4.54 | 26.1 | 0 | 0 | 0.01 | 0.19 | 0.48 | 3.35 | Thermus thermophilus SG0.5JP17-16 (100) | |
| Other | OTU97_25 | 3.57 | 3.47 | 0.75 | 2.16 | 2.52 | 0.11 | 0.44 | 0.14 | 3.96 | Geobacter daltonii FRC-32 (95)b |
| OTU97_12 | 1.03 | 0.45 | 1.7 | 0.18 | 1.33 | 0.41 | 2.43 | 1.83 | 1.17 | Alterococcus agarolyticus ADT3 (91) | |
| OTU97_14 | 0 | 0 | 4.36 | 17.7 | 0 | 8.96 | 16.8 | 14.3 | 0 | Chlorobaculum tepidum TLS (87) | |
| OTU97_17 | 0.05 | 0.1 | 0.09 | 0.09 | 0.02 | 0.02 | 1.87 | 0.77 | 1.26 | Thermobispora bispora DSM 43833 (100) | |
| OTU97_18 | 3.46 | 2.43 | 3.02 | 0.96 | 1.53 | 0.51 | 0.3 | 0.14 | 0.61 | Plasticicumulans lactativorans YD (94) | |
| OTU97_27 | 0.16 | 0.01 | 0.14 | 0.46 | 0.82 | 0.27 | 0.3 | 0.1 | 1.92 | Thermobispora bispora DSM 43833 (95) | |
| OTU97_31 | 0 | 0.1 | 0.04 | 6.71 | 4.08 | 2.94 | 0 | 0 | 0 | Thermaerobacter composti Ni80 (95) | |
| OTU97_37 | 0 | 0 | 0 | 5.65 | 4.35 | 3.16 | 0.33 | 0.24 | 0 | Lysobacter oryzae YC6269 (99) | |
| OTU97_53 | 0.1 | 0.11 | 0.07 | 0.41 | 0.9 | 0.41 | 0.33 | 0.24 | 0.2 | Enhydrobacter aerosaccus PAGU 1624 (97) | |
| OTU97_63 | 0 | 0.06 | 0 | 0.73 | 0.6 | 0.31 | 0.03 | 0.05 | 0.09 | Thiobacter subterraneus C55 16S (98) | |
| OTU97_73 | 0.1 | 0.03 | 0.01 | 0.18 | 0.25 | 0.13 | 0.08 | 0.05 | 0.11 | Rhodomicrobium udaipurense JA643 (96) | |
| OTU97_79 | 0.05 | 0.02 | 0 | 0 | 0 | 0.11 | 0 | 0 | 0 | Planifilum yunnanense LA5 (100) | |
a
Phylum description was assigned by the Ribosomal Database Project Classifier, release 10, and the OTU identification was assigned by GenBank. Rep., replicate.
b
Uncultivated clones with 99% identity to OTU_25 are affiliated with the Myxococcales.