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. 2014 Dec;80(24):7741–7751. doi: 10.1128/AEM.02298-14

TABLE 2.

Primer pairs used to screen for the presence of the arg, nos, and otc genes in Staphylococcus strains

PCR target Primer pair Nucleotide sequences (forward and reverse, respectively) (5′ to 3′) Amplicon size (bp) Species ENA accession no. of the entries used for primer design
arg ARG-F and ARG-R THGGDATGAGRGATTTRGA and GCAAARTGRCTTTCHCKATA 247 S. caprae, S. capitis, S. epidermidis, S. saprophyticus, S. simiae, S. warneri, S. xylosus EFS16894, BAE17866, ABF13437, EEE48798, EES42258, EEQ79567, EHJ09071, EGG96003, EGS40237
nos NOS-1-F and NOS-1-R CAAAAATGGCATGGAGAAAC and CCATCCATTAAAAGGTGCTG 523 S. capitis, S. epidermidis, S. equorum, S. warneri EEE48709, EEQ78851, EFA89185, EFV88123, EGG97234, EGG63344, EGG71090 EGG71063, EGS40499, EGS80208, EGS78236, EGS80733, EHM67228, EHQ72179, EHQ76423, EHQ75636, EHR79954, EHR81536, EHR82566, EHR90879, EHR89224, EHR94024, EHR95252, EHR98881, EHS00755, EHQ81520, EEE48709, EEQ78851, EFA89185, EFV88123, EGG97234, EGG63344, EGG71090, EGG71063, EGS40499, EGS80208, EGS78236, EGS80733, EHM67228, EHQ72179, EHQ76423, EHQ75636, EHR79954, EHR81536, EHR82566, EHR90879, EHR89224, EHR94024, EHR95252, EHR98881, EHS00755, EHQ81520, EJE31238, EJE36529, EJE38416, EJE39628, EJE43873, EJE45333, CCI58543
NOS-2-F and NOS-2-R GGNGATCCTGCTGAAAAAGA and GCAGCGGTNAAATGATCNAC 490 S. aureus, S. carnosus CAL28392, AAW36946
NOS-3-F and NOS-3-R TGGACGCTTATTTTGGGATT and GGGGCTAACCAAGACCATTT 768 S. haemolyticus BAE04347
NOS-4-F and NOS-4-R TTGGATGGCAAGGTCAGTAT and ACCAATGTGGGAGACAAAGA 541 S. saprophyticus subsp. saprophyticus BAE18022, EHY92989
otc OTC-1-F and OTC-1-R AAACATGTTATTGTAAACATTTTGTC and CACACAGGCACACCTGAATA 594 S. haemolyticus AP006716
OTC-2-F and OTC-2-R ACGCCGGTATAGAACAGCAAAAA and CGTCAGGTTCACCCATTGATACC 618 S. haemolyticus AP006716
OTC-3-F and OTC-3-R CCCTTAAAGAATTAAATCCAACAGAT and GATTACAACTTCATAACCTTTTTGG 586 S. haemolyticus AP006716