Table 1.
Sequences and coordinates of primers and probes for RT-PCR analysis.
| Transcript | Oligonucleotide sequence (5’-3’) | Product size (bp) | Genome coordinate |
| Wp | 5’primer CAGGAGATCTGGAGTCCACACAAATCCT | 131/136 | 14396-14556 |
| 5’primer GAGGAGATCTGGAGTCCACACAAATGGG | 14396-14561 | ||
| 3’primer ACTGAAGCTTGACCGGTGCCTTCTTAGGAG | 14735-14716 | ||
| probe GAGACCGAAGTGAAGGCCCTGGACCAACCC | 14561-14590 | ||
| Cp | 5’primer TGTAGATCTGATGGCATAGAGAC | 285/290 | 11342-11355 |
| 3’primer ACTGAAGCTTGACCGGTGCCTTCTTAGGAG | 14735-14716 | ||
| probe AAGGACACCGAAGACCCCCAGAG | 11356-11378 | ||
| Qp | 5’primer ATATGAGCTCGTGCGCTACCGGATGGCG | 255 | 62441-62457 |
| 3’primer GATCGAATTCCATTTCCAGGTCCTGTACCT | 107987-107967 | ||
| probe GGTGAATCTGCTCCCAGGTC | 67628-67609 | ||
| EBNA1 | 5’primer GATGAGCGTTTGGGAGAGCTGATTCTGCA | 273 | 67510-67539 |
| 3’primer TCCTCGTCCATGGTTATCAC | 108075-108056 | ||
| probe AGACCTGGGAGCAGATTCAC | 67608-67627 | ||
| EBNA2 | 5’primer GCTGCTACGCATTAGAGACC | 339 | 47892-47911 |
| 3’primer TCCTGGTAGGGATTCGAGGG | 48616-48597 | ||
| probe CAGCACTGGCGTGTGACGTGGTGTAAGTT | 48391-48420 | ||
| LMP1 | 5’primer TCCTCCTCTTGGCGCTACTG | 490 | 169383-169364 |
| 3’primer TCATCACTGTGTCGTTGTCC | 168740-168759 | ||
| probe GAACAGCACAATTCCAAGGAACAATGCCTG | 169061-169090 | ||
| LMP2A | 5’primer ATGACTCATCTCAACACATA | 280 | 166874-166893 |
| 3’primer CATGTTAGGCAAATTGCAA | 380-361 | ||
| probe ATCCAGTATGCCTGCCTGTA | 62-81 | ||
| LMP2B | 5’primer CAGTGTAATCTGCACAAAGA | 325 | 169819-169838 |
| 3’primer CATGTTAGGCAAATTGCAAA | 380-361 | ||
| probe ATCCAGTATGCCTGCCTGTA | 62-81 | ||
| BZLF1 | 5’primer ATTGCACCTTGCCGCCACCTTTG | 608 | 103194-103180 |
| 3’primer CGGCATTTTCTGGAAGCCACCCGA | 102486-102463 | ||
| probe CACTGCTGCTGCTGTTTGAACAGT | 102772-102795 | ||
| BRLF1 | 5’primer ACCATACAGGACACAACACCTC | 266 | 106166-106145 |
| 3’primer GATGTTGAGCGTGGCCATTAGC | 104959-104980 | ||
| probe GTTAGCCTCAGAAAGTCTTCCAAGCCATCC | 105140-105169 | ||
| BARF1 | 5’primer GGCTGTCACCGCTTTCTTGG | 203 | 165560-165579 |
| 3’primer AGGTGTTGGCACTTCTGTGG | 165762-165743 | ||
| probe CTGGTTTAAACTGGGCCCAGGAGAGGAGCA | 165644-165673 | ||
| BHRF1 | 5’primer GTCAAGGTTTCGTCTGTGTG | 211 | 53830-53849 |
| 3’primer TTCTCTTGCTGCTAGCTCCA | 54480-54461 | ||
| probe ATGCACACGACTGTCCCGTATACAC | 54435-54411 | ||
| BcLF1 | 5’primer TGCCCAATCCCAAGTACACGACC | 377 | 136229-136207 |
| 3’primer CAGCAGGTCATAATTGGACGGG | 135853-135874 | ||
| probe GAGAGCATTCTGTAGGTTAAACGCGAGGA | 136099-136128 | ||
| BLLF1 | 5’primer CCTACCTTGAATACAACTGG | 309 | 90860-90841 |
| 3’primer TGACGCTTGGCTGGTGGTGC | 89961-89980 | ||
| probe TGGTGACATCCGCGGTGGAT | 90731-90750 |