Table 2.
SNP name | Genetic model | OR(95%CI) | Genotype | Controls(n = 683) | Patients(n = 493) | p-value* | AIC |
---|---|---|---|---|---|---|---|
rs1049982 | Recessive | 0.93 (0.63-1.37) | T/T | 79 (12.8%) | 54 (13.4%) | 0.72 | 1309.4 |
C/C-C/T | 537(87.2%) | 350 (86.6%) | |||||
rs475043 | Recessive | 1.27 (0.88-1.85) | G/G | 75 (11.5%) | 62 (13.3%) | 0.21 | 1454.3 |
A/A-A/G | 577 (88.5%) | 404 (86.7%) | |||||
rs511895 | Recessive | 1.25 (0.86-1.81) | A/A | 74 (11.4%) | 60(12.9%) | 0.25 | 1451.9 |
G/G-A/G | 576(88.6%) | 404 (87.1%) | |||||
rs7104301 | Recessive | 0.78 (0.51-1.19) | G/G | 69 (10.6%) | 40 (8.6%) | 0.24 | 1454.3 |
A/A-A/G | 584 (89.4%) | 425 (91.4%) | |||||
rs769214 | Recessive | 0.86 (0.59-1.26) | G/G | 80 (12.5%) | 57 (12.4%) | 0.45 | 1436 |
A/A-A/G | 560 (87.5%) | 404 (87.6%) | |||||
rs5964125 | Dominant | 1.07 (0.81-1.40) | A/G-G/G | 182 (27.8%) | 130 (27.8%) | 0.65 | 1462.2 |
A/A | 472 (72.2%) | 337 (72.2%) | |||||
rs5964151 | Dominan | 1.10 (0.83-1.44) | G/T-G/G | 181 (27.7%) | 133 (28.5%) | 0.51 | 1459.3 |
T/T | 472 (72.3%) | 333 (71.5%) | |||||
rs1014852 | Recessive | 1.22 (0.29-5.19) | T/T | 4 (0.6%) | 4 (0.9%) | 0.79 | 1462.3 |
A/A-A/T | 650 (99.4%) | 463 (99.1%) | |||||
rs11415624 | Recessive | 0.90 (0.60-1.34) | A/A | 73 (11.2%) | 47 (10.1%) | 0.59 | 1458.5 |
D/D-D/A | 579 (88.8%) | 419 (89.9%) | |||||
rs3736729 | Recessive | 0.74 (0.54-1.01) | C/C | 147 (22.4%) | 79 (16.9%) | 0.058** | 1458.7 |
A/A-A/C | 508 (77.6%) | 387 (83.1%) | |||||
rs4140528 | Dominant | 0.98 (0.77-1.25) | C/T-T/T | 297 (45.6%) | 206 (44.4%) | 0.87 | 1455.4 |
C/C | 354 (54.4%) | 258 (55.6%) | |||||
rs7515191 | Recessive | 1.21 (0.86-1.70) | A/A | 93 (14.2%) | 77 (16.5%) | 0.22 | 1461.7 |
G/G-A/G | 562 (85.8%) | 390 (83.5%) | |||||
rs7549683 | Recessive | 1.21 (0.86-1.70) | T/T | 93 (14.3%) | 76 (16.3%) | 0.27 | 1454.8 |
G/G-G/T | 556 (85.7%) | 391 (83.7%) | |||||
rs4812042 | Dominant | 0.96 (0.75-1.23) | A/G-G/G | 357 (55.6%) | 258 (55.4%) | 0.73 | 1449.3 |
A/A | 285 (44.4%) | 208 (44.6%) | |||||
rs7121 | Recessive | 0.97 (0.71-1.32) | C/C | 130 (20.3%) | 93 (19.9%) | 0.84 | 1442.5 |
T/T-C/T | 509 (79.7%) | 374 (80.1%) | |||||
rs919196 | Dominant | 1.12 (0.87-1.45) | C/T-C/C | 224 (34.3%) | 169 (36.2%) | 0.37 | 1460.2 |
T/T | 429 (65.7%) | 298 (63.8%) | |||||
rs406113 | Dominant | 1.26 (0.98-1.62) | A/C-C/C | 314 (51%) | 272 (57.6%) | 0.066** | 1408.9 |
A/A | 302 (49%) | 200 (42.4%) | |||||
rs974334 | Recessive | 2.01 (1.07 -3.80) | G/G | 18 (2.8%) | 25 (5.4%) | 0.03** | 1452.9 |
C/C-C/G | 633 (97.2%) | 441 (94.6%) | |||||
rs1002149 | Dominant | 0.95 (0.72-1.26) | G/T-T/T | 173 (28.2%) | 127 (27.4%) | 0.73 | 1417.4 |
G/G | 441 (71.8%) | 337 (72.6%) | |||||
rs2551715 | Recessive | 0.88 (0.62-1.26) | A/A | 94 (14.4%) | 60 (12.9%) | 0.5 | 1455.5 |
G/G-A/G | 557 (85.6%) | 405 (87.1%) | |||||
rs2911678 | Recessive | 0.96 (0.48-1.95) | T/T | 20 (3.1%) | 14 (3%) | 0.92 | 1443.5 |
A/A-A/T | 629 (96.9%) | 445 (97%) | |||||
rs8190996 | Recessive | 1.22 (0.89-1.66) | T/T | 126 (19.4%) | 96 (20.6%) | 0.21 | 1456.6 |
C/C-C/T | 524 (80.6%) | 371 (79.4%) | |||||
rs13041792 | Dominant | 1.13 (0.88-1.45) | A/G-A/A | 240 (36.9%) | 181 (39.1%) | 0.35 | 1450.9 |
G/G | 411 (63.1%) | 282 (60.9%) | |||||
rs2273684 | Recessive | 1.21 (0.88-1.65) | G/G | 115 (17.6%) | 92 (19.8%) | 0.24 | 1456 |
T/T-G/T | 539 (82.4%) | 373 (80.2%) | |||||
rs1805754 | Dominant | 1.31 (1.02- 1.68) | A/C-C/C | 257 (40%) | 215 (46.1%) | 0.034** | 1444.2 |
A/A | 386 (60%) | 251 (53.9%) | |||||
rs933462 | Dominant | 1.06 (0.82-1.38) | G/T-G/G | 431 (66.6%) | 317 (68%) | 0.64 | 1452.2 |
T/T | 216 (33.4%) | 149 (32%) | |||||
rs11013291 | Recessive | 1.09 (0.79-1.51) | C/C | 106 (16.3%) | 82 (17.6%) | 0.6 | 1458.5 |
T/T-C/T | 546 (83.7%) | 385 (82.4%) | |||||
rs2274064 | Recessive | 0.88 (0.65-1.20) | C/C | 136 (21.7%) | 91 (20%) | 0.42 | 1413.4 |
T/T-C/T | 491 (78.3%) | 364 (80%) | |||||
rs2274065 | Dominant | 1.21 (0.85-1.72) | A/C-C/C | 84 (12.9%) | 69 (14.8%) | 0.3 | 1458.9 |
A/A | 568 (87.1%) | 398 (85.2%) | |||||
rs2296164 | Recessive | 0.84 (0.62-1.14) | T/T | 143 (22.6%) | 91 (19.7%) | 0.25 | 1434.1 |
C/C-C/T | 491 (77.4%) | 370 (80.3%) | |||||
rs2072712 | Dominant | 1.16 (0.84-1.59) | C/T-T/T | 108 (16.5%) | 88 (18.9%) | 0.37 | 1461.4 |
C/C | 547 (83.5%) | 378 (81.1%) | |||||
rs570234 | Dominant | 1.03 (0.79-1.34) | A/C-C/C | 388 (63.2%) | 273 (63%) | 0.81 | 1355.7 |
A/A | 226 (36.8%) | 160 (37%) | |||||
rs576881 | Dominant | 1.13 (0.88-1.46) | A/G-G/G | 390 (60.6%) | 293 (62.9%) | 0.33 | 1448.1 |
A/A | 254 (39.4%) | 173 (37.1%) | |||||
rs816296 | Dominant | 1.20(0.93-1.55) | A/C-A/A | 211 (32.5%) | 172 (36.8%) | 0.17 | 1455.6 |
C/C | 438 (67.5%) | 295 (63.2%) | |||||
rs2779248 | Recessive | 0.88 (0.60-1.29) | C/C | 75 (11.7%) | 55 (11.8%) | 0.52 | 1444.5 |
T/T-C/T | 569 (88.3%) | 410 (88.2%) | |||||
rs3729508 | Dominant | 0.90 (0.69-1.18) | A/G-A/A | 443 (70.4%) | 316 (69%) | 0.46 | 1421.5 |
G/G | 186 (29.6%) | 142 (31%) | |||||
rs4827881 | Dominant | 1.00 (0.78-1.29) | A/C-A/A | 246 (37.6%) | 177 (37.9%) | 0.98 | 1462.8 |
C/C | 408 (62.4%) | 290 (62.1%) | |||||
rs5921682 | Dominant | 1.12 (0.85-1.47) | A/G-G/G | 459 (70.4%) | 339 (72.6%) | 0.42 | 1459.8 |
A/A | 193 (29.6%) | 128 (27.4%) | |||||
rs490934 | Recessive | 3.34 (0.57-19.43) | C/C | 2 (0.3%) | 4 (0.9%) | 0.16 | 1459.6 |
G/G-C/G | 651 (99.7%) | 463(99.1%) | |||||
rs1052133 | Recessive | 1.76 (1.00-3.10) | G/G | 34 (5.1%) | 28 (8.1%) | 0.051** | 1124 |
C/C-C/G | 631 (94.9%) | 319 (91.9%) | |||||
rs2842980 | Recessive | 1.40 (0.82-2.37) | T/T | 31 (4.9%) | 31 (6.7%) | 0.22 | 1439.2 |
A/A-A/T | 606 (95.1%) | 435 (93.3%) | |||||
rs2855116 | Dominant | 0.89 (0.68-1.16) | G/T-G/G | 440 (69.3%) | 313 (67%) | 0.39 | 1444.1 |
T/T | 195 (30.7%) | 154 (33%) | |||||
rs8031 | Dominant | 0.85 (0.65-1.10) | A/T-A/A | 458 (70.6%) | 313 (67.2%) | 0.22 | 1454.3 |
T/T | 191 (29.4%) | 153 (32.8%) | |||||
rs2284659 | Recessive | 1.30 (0.92-1.84) | T/T | 83 (12.9%) | 80 (17.2%) | 0.14** | 1445.6 |
G/G-G/T | 560 (87.1%) | 386 (82.8%) | |||||
rs2301241 | Dominant | 0.80 (0.60-1.07) | C/T-C/C | 460 (74.4%) | 348 (71.2%) | 0.14** | 1350.5 |
T/T | 158 (25.6%) | 141 (28.8%) | |||||
rs4135168 | Dominant | 1.17 (0.90-1.52) | A/G-G/G | 238 (39.9%) | 183 (43.4%) | 0.23 | 1328 |
A/A | 359 (60.1%) | 239 (56.6%) | |||||
rs4135179 | Dominant | 1.27 (0.97-1.66) | A/G-G/G | 178 (28%) | 151 (32.8%) | 0.085** | 1431 |
A/A | 458 (72%) | 310 (67.2%) | |||||
rs4135225 | Recessive | 0.66 (0.45- 0.96) | C/C | 104 (16.2%) | 48 (10.5%) | 0.029** | 1431.1 |
T/T-C/T | 536 (83.8%) | 410 (89.5%) | |||||
rs2281082 | Recessive | 1.52 (0.73-3.17) | T/T | 15 (2.3%) | 16 (3.5%) | 0.26 | 1443.5 |
G/G-G/T | 627 (97.7%) | 447 (96.5%) | |||||
rs5756208 | Recessive | 1.54 (0.77-3.11) | T/T | 17 (2.7%) | 17 (3.7%) | 0.23 | 1438.5 |
A/A-A/T | 618 (97.3%) | 445 (96.3%) | |||||
rs10861201 | Recessive | 0.69 (0.41-1.17) | A/A | 49 (7.6%) | 23 (5.1%) | 0.16 | 1411.8 |
C/C-A/C | 592 (92.4%) | 425 (94.9%) | |||||
rs4077561 | Recessive | 1.20 (0.86-1.68) | T/T | 92 (14.6%) | 80 (17.4%) | 0.28 | 1425 |
C/T-T/T | 540 (85.4%) | 380 (82.6%) | |||||
rs4964287 | Dominant | 1.09 (0.85-1.40) | C/T-T/T | 356 (54.4%) | 266 (57%) | 0.48 | 1461.9 |
C/C | 298 (45.6%) | 201 (43%) | |||||
rs4964778 | Dominant | 1.17 (0.90-1.51) | C/G-G/G | 216 (33.1%) | 171 (36.7%) | 0.24 | 1457.3 |
C/C | 436 (66.9%) | 295 (63.3%) | |||||
rs4964779 | Dominant | 1.16 (0.80-1.68) | C/T-C/C | 76 (11.8%) | 62 (13.3%) | 0.43 | 1451.5 |
T/T | 569 (88.2%) | 405 (86.7%) | |||||
rs5018287 | Recessive | 1.12 (0.82-1.53) | A/A | 118 (18%) | 91 (19.6%) | 0.47 | 1453.9 |
G/G-A/G | 536 (82%) | 372 (80.4%) | |||||
rs737866 | Dominant | 1.16 (0.90-1.49) | A/G-G/G | 298 (49%) | 234 (53.4%) | 0.25 | 1364.1 |
A/A | 310 (51%) | 204 (46.6%) | |||||
rs10175754 | Dominant | 0.92 (0.69-1.22) | C/T-C/C | 177 (27.8%) | 118 (26%) | 0.55 | 1418.6 |
T/T | 460 (72.2%) | 335 (74%) | |||||
rs10187719 | Recessive | 0.80 (0.51-1.26) | T/T | 59 (9.9%) | 34 (7.9%) | 0.34 | 1353.8 |
C/C-C/T | 539 (90.1%) | 398 (92.1%) | |||||
rs1346644 | Recessive | 1.48 (0.71-3.09) | G/G | 16 (2.5%) | 15 (3.2%) | 0.29 | 1458 |
C/C-C/G | 637 (97.5%) | 450 (96.8%) | |||||
rs1429374 | Dominant | 1.15 (0.89-1.47) | A/G-A/A | 356 (54.9%) | 274 (59%) | 0.28 | 1450.4 |
G/G | 292 (45.1%) | 190 (41%) | |||||
rs1884725 | Recessive | 0.71 (0.42-1.22) | A/A | 42 (6.5%) | 23 (5%) | 0.21 | 1444.1 |
G/G-A/G | 604 (93.5%) | 439 (95%) | |||||
rs206801 | Recessive | 3.42 (0.33-35.82) | T/T | 1 (0.2%) | 3 (0.6%) | 0.27 | 1462 |
C/C-C/T | 654 (99.8%) | 464 (99.4%) | |||||
rs206812 | Recessive | 0.96 (0.72-1.28) | A/A | 159 (24.4%) | 111 (23.8%) | 0.78 | 1461.8 |
G/G-A/G | 494 (75.6%) | 356 (76.2%) | |||||
rs2073316 | Recessive | 1.14 (0.84-1.56) | A/A | 118 (18.6%) | 95 (20.8%) | 0.4 | 1423.7 |
G/G-A/G | 517 (81.4%) | 361 (79.2%) | |||||
rs207454 | Recessive | 4.98 (1.28- 19.34) | C/C | 3 (0.5%) | 9 (1.9%) | 0.012** | 1450.3 |
A/A-A/C | 646 (99.5%) | 457 (98.1%) | |||||
rs761926 | Dominant | 0.85 (0.66-1.08) | C/G-G/G | 334 (51.1%) | 214 (45.8%) | 0.18 | 1459.4 |
C/C | 319 (48.9%) | 253 (54.2%) |
CI, confidence interval; OR, odds ratio. *p-values adjusted by age. In bold p-values <0.05. **polymorphisms with a p-value<=0.15. Set 1 (n=1176; cases=493 and controls=683). The best model have been chosen with the criteria of lower AIC (Akaike information criterion) and lower BIC (Bayesian information criterion) values. Only AIC is shown in table.