TABLE 1 .
General features of the Aeromonas genomes
| Species | Strain | Genome size (Mbp) | No. of scaffolds | Avg genome coveragee | N50f (nt) | G+C content (%) | No. of predicted CDSsg | Accession no. | Reference |
|---|---|---|---|---|---|---|---|---|---|
| A. allosaccharophila | CECT 4199T | 4.66 | 120 | 87 | 114,541 | 58.4 | 4,173 | PRJEB7019a | This study |
| A. dhakensis {A. aquariorum}b | CECT 7289 T | 4.69 | 78 | 117 | 163,504 | 61.7 | 4,266 | PRJEB7020a | This study |
| A. australiensis | CECT 8023T | 4.11 | 113 | 128 | 95,095 | 58.1 | 3,733 | PRJEB7021a | This study |
| A. bestiarum | CECT 4227T | 4.68 | 41 | 53 | 237,067 | 60.5 | 4,223 | PRJEB7022a | This study |
| A. bivalvium | CECT 7113T | 4.28 | 69 | 30 | 149,050 | 62.3 | 3,909 | PRJEB7023a | This study |
| A. caviae | CECT 838 T | 4.47 | 111 | 95 | 101,663 | 61.6 | 4,081 | PRJEB7024a | This study |
| A. culicicola | CIP 107763T | 4.43 | 64 | 87 | 188,049 | 58.9 | 4,012 | PRJEB7047a | This study |
| A. diversa | CECT 4254T | 4.06 | 37 | 116 | 203,531 | 61.5 | 3,711 | PRJEB7026a | This study |
| A. encheleia | CECT 4342T | 4.47 | 35 | 112 | 380,984 | 61.9 | 4,076 | PRJEB7027a | This study |
| A. enteropelogenes | CECT 4487T | 4.47 | 46 | 56 | 208,775 | 59.5 | 4,054 | PRJEB7028a | This study |
| A. eucrenophila | CECT 4224T | 4.54 | 22 | 50 | 441,212 | 61.1 | 4,113 | PRJEB7029a | This study |
| A. fluvialis | LMG 24681T | 3.90 | 76 | 48 | 108,949 | 58.2 | 3,609 | PRJEB7030a | This study |
| A. ichthiosmia | CECT 4486T | 4.41 | 66 | 70 | 147,024 | 58.4 | 3,997 | PRJEB7050a | This study |
| A. jandaei | CECT 4228T | 4.50 | 58 | 55 | 161,393 | 58.7 | 4,065 | PRJEB7031a | This study |
| A. hydrophila subsp. hydrophila | CECT 839T | 4.74 | 1 | UNKc | 4,744,448 | 61.5 | 4,119 | CP000462d | 74 |
| A. media | CECT 4232T | 4.48 | 233 | 60 | 37,608 | 60.9 | 4,075 | PRJEB7032a | This study |
| A. molluscorum | CIP 108876T | 4.23 | 309 | 9 | 21,565 | 59.2 | 3,946 | AQGQ01d | 75 |
| A. piscicola | LMG 24783T | 5.18 | 91 | 99 | 150,424 | 59.0 | 4,713 | PRJEB7033a | This study |
| A. popoffii | CIP 105493T | 4.76 | 105 | 67 | 113,495 | 58.4 | 4,331 | PRJEB7034a | This study |
| A. rivuli | DSM 22539T | 4.53 | 102 | 99 | 155,151 | 60.0 | 4,149 | PRJEB7035a | This study |
| A. salmonicida subsp. salmonicida | CIP 103209T | 4.74 | 128 | 117 | 89, 543 | 58.5 | 4,442 | PRJEB7036a | This study |
| A. sanarellii | LMG 24682T | 4.19 | 98 | 121 | 82,664 | 63.1 | 3,828 | PRJEB7037a | This study |
| A. schubertii | CECT 4240T | 4.13 | 111 | 260 | 108,810 | 61.7 | 3,808 | PRJEB7038a | This study |
| A. simiae | CIP 107798T | 3.99 | 100 | 86 | 73,112 | 61.1 | 3,654 | PRJEB7039a | This study |
| A. sobria | CECT 4245T | 4.68 | 52 | 34 | 188,072 | 58.6 | 4,160 | PRJEB7040a | This study |
| A. taiwanensis | LMG 24683T | 4.24 | 106 | 66 | 85,294 | 62.8 | 3,884 | PRJEB7041a | This study |
| A. tecta | CECT 7082T | 4.76 | 51 | 89 | 238,229 | 60.1 | 4,278 | PRJEB7042a | This study |
| A. trota | CECT 4255T | 4.34 | 27 | 66 | 640,249 | 60.0 | 3,917 | PRJEB7043a | This study |
| A. veronii bv. veronii | CECT 4257T | 4.52 | 52 | 59 | 181,171 | 58.8 | 4,070 | PRJEB7044a | This study |
| A. allosaccharophila | BVH88 | 4.71 | 131 | 204 | 74,486 | 58.6 | 4,295 | PRJEB7045a | This study |
| A. caviae | Ae398 | 4.44 | 149 | UNK | 76,364 | 61.4 | 3,866 | CACP01d | 76 |
| A. caviae {A. hydrophila subsp. anaerogenes} | CECT 4221 | 4.58 | 332 | 66 | 31,465 | 61.0 | 4,207 | PRJEB7046a | This study |
| A. dhakensis {A. aquariorum} | AAK1 | 4.77 | 37 | 20 | 404,457 | 61.7 | 4,237 | PRJDB70d | 77 |
| A. dhakensis {A. hydrophila subsp. dhakensis} | CIP 107500 | 4.71 | 73 | 84 | 165,885 | 61.8 | 4,284 | PRJEB7048a | This study |
| A. dhakensis {A. hydrophila} | 173 | 4.79 | 74 | 46 | 119,625 | 61.6 | 4,134 | AOBN01d | 78 |
| A. dhakensis {A. hydrophila} | 277 | 4.79 | 41 | 76 | 282,384 | 61.6 | 4,213 | AOBQ01d | 78 |
| A. dhakensis {A. hydrophila} | 14 | 4.67 | 75 | 45 | 130,840 | 62 | UNK | AOBM01d | 78 |
| A. dhakensis {A. hydrophila} | 116 | 4.61 | 45 | 66 | 208,249 | 62 | 4,090 | ANPN01d | 78 |
| A. dhakensis {A. hydrophila} | 259 | 4.70 | 80 | 39 | 117,245 | 61.7 | 4,098 | AOBP01d | 78 |
| A. dhakensis {A. hydrophila} | 187 | 4.78 | 59 | 111 | 197,352 | 61.6 | 4,205 | AOBO01d | 78 |
| A. dhakensis {A. hydrophila} | SSU | 4.94 | 2 | 285 | 4,791,870 | 61.5 | 4,449 | AGWR01d | The Broad Institute |
| A. hydrophila | ML09_119 | 5.02 | UNK | UNK | UNK | 60.8 | 4,434 | CP005966.1d | 79 |
| A. hydrophila | SNUFPC_A8 | 4.97 | 41 | 37 | 234,812 | 60.8 | 4,352 | AMQA01d | 80 |
| A. hydophila subsp. ranae | CIP 107985 | 4.68 | 107 | 140 | 90,304 | 61.6 | 4,268 | PRJEB7049a | This study |
| A. media | WS | 4.78 | 1 | UNK | 4,788,430 | 60.7 | 4,385 | CP007567.1d | 81 |
| A. salmonicida subsp. achromogenes | AS03 | 4.96 | 69 | 21 | 124,543 | 58.3 | UNK | AMQG02d | 82 |
| A. salmonicida subsp. salmonicida | A449 | 5.04 | 1 | UNK | 5,040,536 | 58.2 | 4,436 | CP000644.1d | 83 |
| A. salmonicida subsp. salmonicida | 01-B526 | 4.92 | 604 | 40 | 83,743 | 58.4 | 4,529 | AGVO01d | 84 |
| Aeromonas sp. {A. hydrophila} | AH4 | 4.87 | 41 | 90 | 258,555 | 59.6 | 4,453 | PRJEB6940a | This study |
| Aeromonas sp. {A. veronii} | AMC 34 | 4.58 | 1 | 288 | 4,578,728 | 58.5 | 4,117 | AGWU01d | The Broad Institute |
| A. veronii | B565 | 4.55 | 1 | UNK | 4,551,783 | 58.7 | 4,073 | CP002607d | 85 |
| A. veronii bv. sobria | AER 39 | 4.42 | 4 | 283 | 1,516,045 | 58.9 | 3,948 | AGWT01d | The Broad Institute |
| A. veronii bv. sobria | Hm21 | 4.68 | 50 | 200 | 179,631 | 58.7 | 4,245 | ATFB01d | 62 |
| A. veronii bv. sobria | LMG 13067 | 4.74 | 72 | 46 | 147,470 | 58.3 | 4,171 | PRJEB7051a | This study |
| A. veronii bv. veronii | AER 397 | 4.50 | 5 | 378 | 3,260,625 | 58.9 | 3,986 | AGWV01d | The Broad Institute |
| A. veronii bv. veronii | AMC 35 | 4.57 | 2 | 285 | 4,172,420 | 58.6 | 4,036 | AGWW01d | The Broad Institute |
a
Obtained from the EMBL Nucleotide Sequence Database.
b
Previously published names are indicated inside braces.
c
UNK, unknown.
d
Obtained from GenBank, National Center for Biotechnology Information.
e
The average genome coverage is expressed in bp sequenced divided by genome size.
f
The N50 (reported in nucleotides) represents the smallest of the largest contigs covering 50% of the total size of all contigs.
g
CDS, coding sequence.