Table 1. Datasets D1∼D8 for assemblies.
Datasets | D1 | D2 | D3 | D4 | D5 | D6 | D7 | D8 |
Organism | E.coli K12 MG1655 | S.pombe 972 h- | Human chr14 | |||||
Ref. size | 4.64 Mbp | 12.59 Mbp | 88.29 Mbp | |||||
Data type | simulated | simulated | simulated | real | simulated | real | simulated | real |
Read length | 100 bp | 100 bp | 100 bp | 100 bp | 100 bp | 100 bp | 100 bp | 101 bp |
#Reads (million) | 2×1.16 | 2×1.4 | 2×2.3 | 2×14.2 | 2×3.1 | 2×3.3 | 2×22.1 | 2×16.3 |
Cov. depth | 50× | 60× | 100× | 600× | 50× | 52× | 50× | 40× |
Insert size (bp) | 370±56 | 370±58 | 366±59 | 215±11 | 370±57 | 380±82 | 366±49 | 158±17 |
The RefSeq for E.coli K12 MG 1655 is NC_000913.2; the RefSeq for S.pombe 972 h- are NC_003424.3, NC_003423.3, NC_003421.2, NC_001326.1; the refSeq for human chromosome 14 is NT_026437.12.