Table 4. Evaluation for E.coli simulated short reads data (D1, 50×).
Contigs | Scaffolds | ||||||||
k/O | N50 (kbp) | Cov. (%) | Misass. (#/sum) | N50 (kbp) | Cov. (%) | Misass. (#/sum) | Time (min) | Mem. (GB) | |
PERGA | O≧25 | 174.7 | 100.0 | 0 | 174.7 | 100.0 | 0 | 3 | 0.9 |
IDBA-UD | default | 112.6 | 99.98 | 2/559 | 148.5 | 99.98 | 1/321 | 11 | 0.6 |
ABySS | k = 45 | 119.2 | 99.90 | 0 | 119.2 | 99.42 | 1/3617 | 9 | 1.0 |
Velvet | k = 45 | 108.1 | 99.76 | 7/6658 | 148.3 | 99.89 | 1/1596 | 3 | 0.9 |
SGA | O≧31 | 24.1 | 98.57 | 0 | 95.5 | 98.59 | 1/4120 | 43 | 0.6 |
CABOG | default | 83.1 | 99.03 | 1/2638 | 88.5 | 99.03 | 1/2638 | 77 | 2.6 |
MaSuRCA | default | 172.8 | 87.98 | 4/560k | 172.8 | 87.98 | 4/560k | 16 | 2.2 |