Table 6. Evaluation for E.coli simulated short reads data (D3, 100×).
Contigs | Scaffolds | ||||||||
k/O | N50 (kbp) | Cov. (%) | Misass. (#/sum) | N50 (kbp) | Cov. (%) | Misass. (#/sum) | Time (min) | Mem. (GB) | |
PERGA | O≧25 | 174.7 | 99.99 | 0 | 174.7 | 99.99 | 0 | 5 | 1.2 |
IDBA-UD | default | 124.6 | 99.99 | 0 | 148.6 | 99.96 | 2/1723 | 21 | 0.7 |
ABySS | k = 45 | 126.2 | 99.90 | 1/524 | 135.0 | 90.89 | 4/206k | 16 | 1.7 |
Velvet | k = 45 | 117.5 | 99.75 | 9/7347 | 148.5 | 100.0 | 0 | 7 | 1.4 |
SGA | O≧31 | 21.7 | 98.16 | 0 | 105.6 | 98.46 | 2/1024 | 103 | 0.6 |
CABOG | default | 37.3 | 93.63 | 1/61k | 56.7 | 93.56 | 1/65k | 209 | 2.6 |
MaSuRCA | default | 148.8 | 98.89 | 2/54k | 172.2 | 92.15 | 4/371k | 29 | 2.4 |