Table 7. Evaluation for E.coli real short reads data (D4, 600×).
| Contigs | Scaffolds | ||||||||
| k/O | N50 (kbp) | Cov. (%) | Misass. (#/sum) | N50 (kbp) | Cov. (%) | Misass. (#/sum) | Time (min) | Mem. (GB) | |
| PERGA | O≧25 | 133.5 | 99.99 | 1/207 | 154.8 | 99.99 | 1/207 | 21 | 3.8 |
| IDBA-UD | default | 106.8 | 99.93 | 1/2105 | 148.5 | 99.98 | 0 | 31 | 2.0 |
| ABySS | k = 45 | 96.0 | 93.61 | 4/293k | 113.4 | 91.45 | 5/372k | 64 | 0.3 |
| Velvet | k = 45 | 82.8 | 95.25 | 11/212k | 95.5 | 86.21 | 5/633k | 33 | 5.1 |
| SGA | O≧31 | 19.3 | 98.06 | 0 | 21.3 | 98.15 | 1/411 | 357 | 5.9 |
| CABOG | Could not be run correctly as it required lots of disk space that exceeded our machine | ||||||||
| MaSuRCA | default | 72.3 | 97.33 | 6/126k | 77.6 | 97.29 | 7/129k | 118 | 2.5 |