Table 8. Evaluation for S.pombe simulated short reads data (D5, 50×).
Contigs | Scaffolds | ||||||||
k/O | N50 (kbp) | Cov. (%) | Misass. (#/sum) | N50 (kbp) | Cov. (%) | Misass. (#/sum) | Time (min) | Mem. (GB) | |
PERGA | O≧25 | 255.4 | 99.91 | 0 | 386.7 | 99.90 | 0 | 8 | 1.7 |
IDBA-UD | default | 137.7 | 99.99 | 3/966 | 254.7 | 99.08 | 6/100k | 31 | 1.3 |
ABySS | k = 45 | 181.8 | 99.78 | 12/9k | 211.0 | 76.72 | 21/2.7M | 25 | 1.6 |
Velvet | k = 45 | 158.6 | 99.74 | 15/6k | 293.2 | 99.74 | 8/8k | 11 | 1.9 |
SGA | O≧31 | 43.0 | 98.12 | 1/214 | 155.1 | 98.95 | 4/27k | 103 | 2.0 |
CABOG | default | 139.6 | 95.24 | 3/218k | 157.1 | 90.88 | 6/778k | 243 | 2.5 |
MaSuRCA | default | 417.9 | 90.76 | 6/1.3M | 417.9 | 90.76 | 6/1.3M | 43 | 2.7 |