Table 9. Evaluation for S.pombe real short reads data (D6, 52×).
Contigs | Scaffolds | ||||||||
k/O | N50 (kbp) | Cov. (%) | Misass. (#/sum) | N50 (kbp) | Cov. (%) | Misass. (#/sum) | Time (min) | Mem. (GB) | |
PERGA | O≧25 | 37.0 | 98.97 | 17/71k | 70.3 | 98.97 | 17/73k | 7 | 1.7 |
IDBA-UD | default | 32.1 | 98.54 | 28/140k | 54.0 | 97.56 | 35/247k | 31 | 1.3 |
ABySS | k = 45 | 33.3 | 98.20 | 44/73k | 35.7 | 96.29 | 48/230k | 21 | 0.8 |
Velvet | k = 45 | 28.7 | 97.36 | 26/175k | 42.3 | 95.86 | 29/391k | 6 | 3.9 |
SGA | O≧31 | 21.3 | 97.10 | 16/38k | 39.1 | 97.32 | 21/100k | 114 | 2.0 |
CABOG | default | 22.3 | 95.12 | 8/71k | 49.4 | 98.95 | 11/396k | 705 | 7.3 |
MaSuRCA | default | 36.2 | 97.0 | 17/210k | 64.7 | 93.71 | 20/672k | 70 | 2.7 |