Table 10. Evaluation for human chromosome 14 simulated short reads data (D7, 50×).
Contigs | Scaffolds | ||||||||
k/O | N50 (kbp) | Cov. (%) | Misass. (#/sum) | N50 (kbp) | Cov. (%) | Misass. (#/sum) | Time (min) | Mem. (GB) | |
PERGA | O≧25 | 149.9 | 99.54 | 22/60k | 229.5 | 99.58 | 21/30k | 169 | 9.3 |
IDBA-UD | default | 66.7 | 99.74 | 44/152k | 174.3 | 98.51 | 58/1.24M | 144 | 8.7 |
ABySS | k = 45 | 11.4 | 94.98 | 377/354k | 30.2 | 83.40 | 1109/11M | 331 | 6.0 |
Velvet | k = 45 | 8.6 | 92.24 | 1642/3.4M | 78.6 | 24.87 | 1655/67M | 147 | 13.5 |
SGA | O≧31 | 2.7 | 85.36 | 146/43k | 5.5 | 80.10 | 1980/5M | 1360 | 17 |
CABOG | default | 69.3 | 76.43 | 285/19M | 82.8 | 67.40 | 318/26.6M | 2742 | 11 |
MaSuRCA | Could not be run correctly because of unknown running error |