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. 2014 Dec 2;9(12):e114253. doi: 10.1371/journal.pone.0114253

Table 10. Evaluation for human chromosome 14 simulated short reads data (D7, 50×).

Contigs Scaffolds
k/O N50 (kbp) Cov. (%) Misass. (#/sum) N50 (kbp) Cov. (%) Misass. (#/sum) Time (min) Mem. (GB)
PERGA O≧25 149.9 99.54 22/60k 229.5 99.58 21/30k 169 9.3
IDBA-UD default 66.7 99.74 44/152k 174.3 98.51 58/1.24M 144 8.7
ABySS k = 45 11.4 94.98 377/354k 30.2 83.40 1109/11M 331 6.0
Velvet k = 45 8.6 92.24 1642/3.4M 78.6 24.87 1655/67M 147 13.5
SGA O≧31 2.7 85.36 146/43k 5.5 80.10 1980/5M 1360 17
CABOG default 69.3 76.43 285/19M 82.8 67.40 318/26.6M 2742 11
MaSuRCA Could not be run correctly because of unknown running error