Table 5. Computing time (sec) for the construction of protein molecular surfaces on a personal computer.
Protein (PDB Id) | 1LYZ | 1AFU | 1Y4F | 1AO6 | 1HZH |
No. atoms→ Probe radius↓ | 1001 | 1894 | 4368 | 4600 | 10355 |
1.4 | 2 | 4 | 6 | 8 | 22 |
5 | 12 | 30 | 96 | 110 | 224 |
10 | 27 | 81 | 777 | 853 | 1447 |
15 | 33 | 105 | 1470 | 1678 | 3170 |
20 | 48 | 120 | 1722 | 1865 | 4939 |