Table 2.
Statistics generated from Bayesian MCMC analyses for estimating the four BSPs
| BSP | 1aa (n=29) | 1bb (n=48) | 6aa (n=53) | 6ea (n=48) |
|---|---|---|---|---|
| Rate Priorc | N (9.1025E-4, 1E-5) | N (1.018E-3,1E-5) | N (1.1632E-3,1E-5) | N (1.1646E-3,1E-5) |
| Posteriord | −3228.62±0.21 (−3255.38, −3202.82) | −5135.33±0.31 (−5166.31, −5105.38) | −6827.13±0.42 (−6858.84, −6794.64) | −6413.74±0.31 (−6441.25, −6385.22) |
| Alpha | 1.4496±2.22E-2 (0.27, 2.78) | 0.7083±7.36E-3 (0.33, 1.14) | 0.9082±3.23E-3 (0.6, 1.23) | 1.0937±3.51E-3 (0.7, 1.47) |
| pInv | 0.5±3.65E-3 (0.33, 0.62) | 0.4±2.63E-3 (0.25, 0.51) | 0.44±7.48E-4 (0.37, 0.51) | 0.45±6.51E-4 (0.38, 0.51) |
| Uced.mean | 9.10E-04±1.16E-07 (8.90E-04, 9.29E-04) | 1.02E-03±1.04E-07 (9.99E-04, 1.04E-03) | 1.16E-03±1.10E-07 (1.14E-03, 1.18E-03) | 1.16E-03±1.04E-07 (1.15E-03, 1.18E-03) |
| COV | 0.72±1.44E-03 (0.58, 0.88) | 0.73±1.39E-03 (0.6, 0.87) | 0.70±1.15E-03 (0.59, 0.83) | 0.70±1.49E-03 (0.57, 0.85) |
| tMRCAs | 83.78±0.53 (48.12, 129.67) | 79.97±0.4 (49.27, 115.79) | 78.11±0.43 (53.1, 110.24) | 168.28±1.35 (87.76, 294.04) |
| Covariance | −0.04±1.37E-03 (−0.29, 0.21) | −0.02±1.17E-03 (−0.22, 0.18) | −0.08±9.74E-04 (−0.26, 0.09) | −0.07±1.16E-03 (−0.25, 0.12) |
| Treelikelihood | −3069.34±0.08 (−3082.31, −3055.9) | −4827.15±0.16 (−4845.3, −4809.77) | −6446.43±0.23 (−6466.04, −6427.12) | −6062.87±0.18 (−6081.18, −6045.46) |
a
a normal rate estimated for the actual dataset in this study.
b
a normal rate estimated in this study for an alternative 1b dataset.
c
Normal distribution (mean, lower and upper boundaries).
d
Mean ± Standard error of mean (upper and lower 95% confidence intervals)