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. Author manuscript; available in PMC: 2015 Nov 1.
Published in final edited form as: Oral Oncol. 2014 Sep 18;50(11):1072–1080. doi: 10.1016/j.oraloncology.2014.08.015

Table 2.

Description of the seven significant survival-associated loci identified in oral rinse samples during the Replication stage and their associated genes if applicable.

Locus ID Chromosome Located in a CpG Island Located in an enhancer region UCSC RefGene Group Associated Gene Associated Gene Descriptionb
cg02319972 15 No Yes [intergenic]
cg03784083 11 No Yes Body OPCML Opioid binding-cell adhesion molecule; highly conserved member of the IgLON subfamily of immunoglobulins; two transcript variants have been identified
cg15740054 19 Yes No 5’UTR; TSS200 ADCK4 Uncharacterized AarF Domain Containing Kinase 4; unknown function, although it contains kinase domain; multiple transcript variants have been identified
cg18928362 14 No No TSS1500 ZFYVE26 Encodes a protein which contains a FYVE zinc finger binding domain; involved in cytokinesis; may have involvement in homologous recombination DNA double-strand break repair
cg21022792 6 No No Body GABBR1 Gamma-Aminobutyric Acid B Receptor 1; receptor for a major inhibitory neurotransmitter (GABA); multiple splice variants have been identified
cg21702497 16 Yes No 5’UTR POLR3E RNA polymerase III; catalyzes the transcription of DNA into RNA; involved with innate immune response
cg25914931 10 Yes No TSS200 KIF11 Kinase Family Member 11; involvement in spindle dynamics

Abbreviations: 5’UTR = 5’-untranslated region; TSS200 = within 200 bases of the transcription start site; TSS1500 = within 1500 bases of the transcription start site