Table 3.
Annotation of the Top 16 Translocation Hot Regions
| Hot Region | Chromosome | Begin | End | Size | gieStain | CDS | Gene | Repeats | Occurrence |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12 | 66451361 | 66451530 | 170 | gpos50 | SINE, Simple | 8627 | ||
| 2 | 7 | 105741881 | 105741990 | 110 | gneg | CCDS47685.1 | SYPL1 | Simple | 3911 |
| 3 | 2 | 33141301 | 33141770 | 470 | gpos75 | LINC00486 | Simple | 2833 | |
| 4 | 6 | 160521751 | 160521890 | 140 | gneg | CCDS5273.1 | IGF2R | SINE, LINE | 2700 |
| 5 | 1 | 231007791 | 231007920 | 130 | gpos50 | SINE, LTR | 2683 | ||
| 6 | 2 | 88206871 | 88207030 | 160 | gneg | LINE, Simple | 1936 | ||
| 7 | 2 | 238252121 | 238252260 | 140 | gneg | CCDS33412.1 | COL6A3 | SINE, Simple | 1642 |
| 8 | 9 | 140785301 | 140785680 | 380 | gneg | CCDS59523.1 | CACNA1B | 1513 | |
| 9 | 6 | 382041 | 382470 | 430 | gneg | 1371 | |||
| 10 | 3 | 64682161 | 64682300 | 140 | gpos50 | ADAMTS9-AS2 | SINE | 1262 | |
| 11 | 4 | 1708921 | 1709060 | 140 | gneg | CCDS3350.1 | SLBP | SINE | 1206 |
| 12 | 1 | 62390831 | 62390970 | 140 | gpos50 | CCDS617.2 | INADL | SINE, Simple | 1193 |
| 13 | 17 | 30276681 | 30276790 | 110 | gneg | CCDS11270.1 | SUZ12 | SINE | 1127 |
| 14 | 16 | 33428141 | 33428570 | 430 | gneg | LINE | 1116 | ||
| 15 | 5 | 141379101 | 141380040 | 940 | gneg | SINE, LINE | 1083 | ||
| 16 | 7 | 107410631 | 107410760 | 130 | gpos75 | CCDS5748.1 | SLC26A3 | SINE, Simple | 1067 |
Note.—CDS, coding sequence id in NCBI; Repeats, repetitive elememts contained in the region including simple repeats (Simple); SINE, short interspersed nuclear elements; LINE, long interspersed nuclear elements; LTR, long terminal repeat elements; occurrence, the numer of observations of translocations in the region.