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. Author manuscript; available in PMC: 2014 Dec 4.
Published in final edited form as: Clin Sci (Lond). 2014 May;126(10):727–738. doi: 10.1042/CS20130385

Table 1. Cloning primers and PCR amplification conditions for the SOX genes.

T(A) = temperature of annealing for PCR. In some constructs a secondary digest was performed which cleaved only the control vector not containing an insert.

SOX gene Sox group DNA Source Right Primer Left Primer T(A) °C Restriction enzymes for cloning Secondary digest pEF-1 vector frame
SOX2 B1 DNASU: HsCD00329522 TCGGAATTCCCACATGTGTGAGAGGGGCA AATGGATCCAGCATGGACAACATGATGGAGACG 60.5 BamHI and EcoRI - A
SOX3 B1 Thermo: MHS6278-202857278 AAAGAATTCTCCGATGTGGGTCAGCGGCA ATAGGATCCGGAATGCGACCTGTTCGAGAGA 59.8 BamHI and EcoRI - A
SOX4 C DNASU: HsCD00299790 TTGGAAGATATCGTAGGTGAAAACCAGGTTGGAGATG TTCCAAGGATCCGCCATGGTGCAGCAAACCAAC 60.5 BamHI and EcoRV EcoRI B
SOX5 D DNASU: HsCD00442638 GATGCGGCCGCGTTGGCTTGTCCTGCAATATGGTTTTCACTG ACCGGATCCACCATGTCTTCCAAGCGACCAGCCTC 64.4 BamHI and NotI EcoRI C
SOX6 D DNASU: HsCD00080539 TTGGAAGCGGCCGCGTTGGCACTGACAGCCTC TTCCAAGAATTCGAAATGGGAAGAATGTCTTCCAAG 56.3 EcoRI and NotI BstXI C
SOX9 E DNASU: HsCD00074606 TCGGAATTCCCAAGGTCGAGTGAGCTG AATGGATCCATGGATCTCCTGGACCCC 56.7 BamHI and EcoRI - A
SOX14 B2 DNASU: HsCD00436531 GATGCGGCCGCCATGGCCGTAGCGTGGGC ACCGGATCCACCATGGCCAAACCTTCAGACCAC 64.2 BamHI and NotI - C
SOX15 G DNASU: HsCD00075337 TTGGAAGCGGCCGCGAGGTGGGTTAGGGGCATGGG TTCCAAGGATCCGCCATGGCGCTACCAGGCTCC 65.4 BamHI and NotI EcoRI C
SOX17 F DNASU: HsCD00303132 TCGGAATTCCACGTCAGGATAGTTGCAGTAA AATGGATCCATGGGCAGCCCGGATG 57.5 BamHI and EcoRI - A
SOX30 H DNASU: HsCD00005630 TTGGAAGCGGCCGCATCCCTGAGCACTTTTTCTTCTTCC TTCCAAGAATTCGCCATGGAGAGAGCCAGACCC 60.2 EcoRI and NotI EcoRV C