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. Author manuscript; available in PMC: 2014 Dec 4.
Published in final edited form as: Clin Sci (Lond). 2014 May;126(10):727–738. doi: 10.1042/CS20130385

Table 2. ENCODE transcription factors binding 5′ of the MAS gene.

Table shows the transcription factor identified, the location of the sequence bound in ChIP on chr6 (showing both the 5′ and 3′ base locations), the location of the sequence relative to the ATG of MAS (both 5′ and 3′), the signal intensity (high of 1000), the cell type the transcription factor was associated in, and the lab that identified the binding. KAP1 binding was not detected in K562b cells (red).

Transcription factor chr6 position chr6 position relative to ATG of MAS relative to ATG of MAS Signal cell type lab
GATA 160,327,593 160,327,783 −205 −395 754 SH-SY5Y Stanford
PAX5-C20 160,325,587 160,325,810 −2,178 −2,401 424 GM-12878 Hudson Alpha
PAX5-N19 160,325,577 160,325,836 −2,152 −2,411 455 GM-12878 Hudson Alpha
JunD 160,319,976 160,320,235 −7,753 −8,012 226 HepG2 Stanford
ZNF263 160,319,370 160,319,992 −7,996 −8,618 1000 T-Rex-HEK293 Stanford
EBF 160,318,810 160,318,885 −9,103 −9,178 401 GM-12878 Stanford
EBF-(C-8) 160,318,752 160,318,987 −9,001 −9,236 146 GM-12878 Hudson Alpha
SRF 160,301,004 160,301,004 −26,984 −26,984 166 K562 Hudson Alpha
FOXA2_(SC-6554) 160,299,821 160,300,044 −27,944 −28,167 125 HepG2 Hudson Alpha
EBF 160,299,817 160,300,080 −27,908 −28,171 91 GM-12878 Stanford
FOXA1_(SC-101058) 160,299,813 160,300,082 −27,906 −28,175 228 HepG2 Hudson Alpha
EBF_(C-8) 160,296,469 160,296,719 −31,269 −31,519 759 GM-12878 Hudson Alpha
ZNF274 160,296,351 160,296,734 −31,254 −31,637 191 NT2-D1 Stanford
KAP-1 160,296,310 160,296,770 −31,218 −31,678 736 U2OS Stanford
KAP-1 160,296,310 160,296,770 −31,218 −31,678 701 HEK293(b) Stanford
KAP-1 160,296,310 160,296,770 −31,218 −31,678 None K562b Stanford
FOXA2_(SC-6554) 160,296,228 160,296,411 −31,577 −31,760 618 HepG2 Hudson Alpha
HDAC2_(SC-6296) 160,296,223 160,296,472 −31,516 −31,765 657 HepG2 Hudson Alpha
SP1 160,296,223 160,296,502 −31,486 −31,765 265 HepG2 Hudson Alpha
FOXA1_(C-20) 160,296,219 160,296,452 −31,536 −31,769 724 HepG2 Hudson Alpha
FOXA1_(SC-101058) 160,296,215 160,296,458 −31,530 −31,773 983 HepG2 Hudson Alpha
RXRA 160,296,216 160,296,475 −31,513 −31,772 343 HepG2 Hudson Alpha
TCF4 160,296,208 160,296,591 −31,397 −31,780 96 HepG2 Stanford
CTCF_(SC-5916) 160,284,383 160,284,598 −43,390 −43,605 316 H1-hESC Hudson Alpha
SMC3_(ab9263) 160,284,358 160,284,616 −43,372 −43,630 760 GM-12878 Stanford