Table 1. RNAseq metadata from T. infestans sialotranscriptomes following trimming of low quality (<10) ends and rejection of average quality <20.
Library name * | Strains used ** | Total number of sequences | Total number of residues | Average length | Median size | SRA accession |
Arg-A | 30 | 38,060,109 | 10,385,270,028 | 272.9 | 300 | SRR1168894 |
Arg-N | 30 | 39,759,543 | 11,417,825,638 | 287.2 | 300 | SRR1168938 |
BolCol-A | 21,28,37,40,43,47 | 38,418,718 | 10,546,661,014 | 274.5 | 300 | SRR1168892 |
BolCol-N | 21,28,37,40,43,47 | 39,223,445 | 11,258,595,763 | 287 | 300 | SRR1168893 |
BolNat-A | 24, 50, 54, 56 | 38,573,948 | 10,165,647,571 | 263.5 | 300 | SRR1168890 |
BolNat-N | 24, 50, 54, 56 | 48,570,803 | 13,994,680,783 | 288.1 | 300 | SRR1168891 |
Chile-A | 6 | 34,269,672 | 9,102,400,847 | 265.6 | 300 | SRR1168882 |
Chile-N | 6 | 38,866,808 | 11,069,693,781 | 284.8 | 300 | SRR1168885 |
Peru-A | 4, 5 | 38,540,450 | 9,775,095,017 | 253.6 | 300 | SRR1168888 |
Peru-N | 4, 5 | 41,292,975 | 11,889,399,223 | 287.9 | 300 | SRR1168889 |
Total | 395,576,471 | 109,605,269,665 |
*Arg = Argentina. BolCol = Bolivian colony. BolNat = Bolivian F1 strain. The suffix –A stands for adult, -N for nymphal libraries.
**See supplemental table S1 for description of strains.