. 2014 Dec 4;8(12):e3372. doi: 10.1371/journal.pntd.0003372

Table 3. Polymorphic sites allowing differences between ITS-2 and ITS1 rDNA haplotypes of T. infestans samples analysed from Bolivia, Peru, Chile and Argentina and those available in GenBank.

ITS-2
GenBank Acc. No.	Haplotype code	Variable positions
		`222 2334444444 4444444444 4444444444 444444444`
		`5557777222 2454444555 5555555666 6666666777 777777788`
		`4675678678 9726789012 3456789012 3456789012 345678901`
`AJ576051`	`T.inf-GT1`	`T------AAA TCAATATTTA AAAAGAAAAG AGATGCGCAA TCATTTTTT`
`AJ576051`	`T.inf-H1` ^*	`.................................................`
`AJ576054`	`T.inf-GT2`	`A—ATAT.....T....................................`
`AJ576054`	`T.inf-H2` ^*	`A—ATAT.....T....................................`
`AJ576052`	`T.inf-GT3`	`AATATAT.....T....................................`
`AJ576053`	`T.inf-GT4`	`A—AT----- -.......................................`
`AJ576055`	`T.inf-GT5`	`A—ATAT...........................................`
`HQ333211`	`T.inf-ITS2Hap1`	`.------....................--- ---------- ---------`
`HQ333212`	`T.inf-ITS2Hap2`	`A—AT—....................--- ---------- ---------`
`HQ333213`	`T.inf-ITS2Hap3`	`A—AT—....T...............--- ---------- ---------`
`HQ333214`	`T.inf-ITS2Hap4`	`A—ATAT.....T..............--- ---------- ---------`
`AY860387`	`ITInf72`	`AATATAT.....T....................................`
`AY860388`	`ITInf74`	`A------......------- ---------- ---------- ---------`

*haplotypes from present paper; variable positions = numbers (to be read in vertical) refer to variable positions obtained in the ITS-2 and ITS-1 alignments obtained with MEGA 6.0; symbols: identical positions = .; indel = -; indel position in 3′ end of the alignment = not sequenced. Haplotypes that seem to be identical: T.inf-GT1 = T.inf-ITS2Hap1; T.inf-GT2 = T.inf-ITS2Hap4; T.inf-GT3 = ITInf72.