Table 1. Sequences of C. psittaci and adenovirus primers and probes used in the study.
Pathogen | Type of PCR | Target gene | Target length (base pairs) | Primer/probe sequences |
Chlamydophila psittaci | Real-time qPCR | ITS | 145 | Forward 5′-TTGGTCTGTAAATTATTGATCC-3′ |
Reverse 5′-CATTTAGTTTACGATCAAGTATG-3′ | ||||
Probe 5′-FAM-ATGCAAGTTAACWTCACCTAAAGACAT-BHQ1-3′ | ||||
Adenovirus* | Conventional PCR | pol | 324 | Forward 5′-GTCTACGAYATHTGYGGMATGTA-3′ |
Reverse 5′-TCTCCATCCTCDRTTRTGVA-3′ | ||||
Psittacine adenovirus HKU1 | Conventional PCR | pol | 175 | Forward 5′-GGGTGACTATGTCTATCGACG-3′ |
Reverse 5′-GATTTCATACTTCGACAGCG-3′ | ||||
Psittacine adenovirus HKU1 | Real-time qPCR | pol | 175 | Forward 5′-GGGTGACTATGTCTATCGACG-3′ |
Reverse 5′-GATTTCATACTTCGACAGCG-3′ | ||||
Probe 5′-FAM-AGGTAGTGTGTCGAGGCGCT-BHQ1-3′ |
qPCR, quantitative polymerase chain reaction.
*Consensus primers for adenovirus were designed by performing multiple alignments of pol genes of adenovirus and related sequences available in NCBI GenBank.