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. 2014 Dec 4;8(12):e3318. doi: 10.1371/journal.pntd.0003318

Table 1. Sequences of C. psittaci and adenovirus primers and probes used in the study.

Pathogen Type of PCR Target gene Target length (base pairs) Primer/probe sequences
Chlamydophila psittaci Real-time qPCR ITS 145 Forward 5′-TTGGTCTGTAAATTATTGATCC-3′
Reverse 5′-CATTTAGTTTACGATCAAGTATG-3′
Probe 5′-FAM-ATGCAAGTTAACWTCACCTAAAGACAT-BHQ1-3′
Adenovirus* Conventional PCR pol 324 Forward 5′-GTCTACGAYATHTGYGGMATGTA-3′
Reverse 5′-TCTCCATCCTCDRTTRTGVA-3′
Psittacine adenovirus HKU1 Conventional PCR pol 175 Forward 5′-GGGTGACTATGTCTATCGACG-3′
Reverse 5′-GATTTCATACTTCGACAGCG-3′
Psittacine adenovirus HKU1 Real-time qPCR pol 175 Forward 5′-GGGTGACTATGTCTATCGACG-3′
Reverse 5′-GATTTCATACTTCGACAGCG-3′
Probe 5′-FAM-AGGTAGTGTGTCGAGGCGCT-BHQ1-3′

qPCR, quantitative polymerase chain reaction.

*Consensus primers for adenovirus were designed by performing multiple alignments of pol genes of adenovirus and related sequences available in NCBI GenBank.