Table I. Summary of rankings assigned to IFNs and TNF-α in IPA reports of upstream regulators of significance in A549 cell responses to hRSV infection.
Cytokine | Features |
Representative target moleculesc | |
---|---|---|---|
Rankinga | Conformityb | ||
IFNG | 1 | 80 of 83 | DDX58, IFIT1, IFIT2, IFIT3, ISG15, ISG20, MX1, PSMB9, SAMHD1, WARS |
IFNA2 | 3 | 45 of 46 | DDX58, IFIT1, IFIT2, IFIT3, ISG15, ISG20, MX1, SAMHD1 |
IFNL1 | 4 | 33 of 33 | DDX58, IFIT1, IFIT2, IFIT3, ISG15, ISG20, MX1, PSMB9 |
IFN alpha | 8 | 40 of 47 | DDX58, IFIT1, IFIT2, IFIT3, ISG15, ISG20, MX1, PSMB9, WARS |
TNF | 9 | 72 of 82 | DDX58, IFIT1, IFIT3, ISG15, MX1, PSMB9 |
IFNB1 | 26 | 20 of 26 | DDX58, IFIT1, IFIT2, IFIT3, ISG15, MX1 |
a Order of appearance in the list of upstream regulators reported by IPA.
b Indicates the number of regulated protein group associated gene names which conformed to the direction of regulation predicted by IPA.
c Subset of the target molecules reported by IPA.