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. Author manuscript; available in PMC: 2014 Dec 6.
Published in final edited form as: J Proteome Res. 2013 Feb 4;12(3):1467–1477. doi: 10.1021/pr3011205

Table 2. Polycomb–H3 Binding Free Energy Residue Decompositiona.

residue contrib in polycomb/H3K27me3 residue contrib in polycomb/H3K27me3
H3L20 −0.08 ± 0.54 Glu29 −1.22 ± 0.34
H3A21 −0.50 ± 0.20 Trp47 −5.08 ± 0.42
H3T22 −1.78 ± 0.42 Lys48 −0.13 ± 0.26
H3K23 −6.66 ± 0.56 Trp50 −2.36 ± 0.20
H3A24 −4.27 ± 0.33 Tyr54 −0.68 ± 0.12
H3A25 −5.41 ± 0.53 Thr56 −1.32 ± 0.12
H3R26 −8.41 ± 0.64 Glu58 −1.18 ± 0.72
H3K27me3 −13.69 ± 0.67 Pro59 −0.64 ± 0.06
H3S28 −2.09 ± 0.67 Asn62 −3.15 ± 0.55
Asp23 −1.82 ± 0.56 Ile63 −1.14 ± 0.13
Leu24 −2.57 ± 0.36 Leu64 −2.84 ± 0.24
Val25 −3.29 ± 0.26 Asp65 −2.59 ± 0.19
Tyr26 −4.82 ± 0.42 Arg67 −1.95 ± 0.53
Ala27 −1.69 ± 0.22 Leu68 −2.26 ± 0.25
Ala28 −1.89 ± 0.26 Glu73 −0.61 ± 0.02
a

The residue Lys48 is included since, although its net contribution is only −0.13 kcal/mol, the van der Waals component to that contribution is relatively high at −0.71 kcal/mol.