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. Author manuscript; available in PMC: 2014 Dec 8.
Published in final edited form as: Int Rev Neurobiol. 2014;116:195–231. doi: 10.1016/B978-0-12-801105-8.00008-4

Table 1.

CNS eQTL data sets for BXD strains (see www.genenetwork.org for a complete list)

GN accession CNS region BXD n Platform mRNA assays cis* eQTLs trans* eQTLs
GN323 Amygdala (BLA) 54 Affy Mouse Gene 1.0 ST 34,760 1,824 3,058
GN394 Whole brain 28 SOLiD RNA-seq, (transcript level) 26,408 418 1,075
GN123 Whole brain 39 Affy Mouse 430 2.0 45,101 2,162 2,771
GN56 Cerebellum 30 Affy Mouse 430 2.0 45,101 2,559 6,631
GN112 Hippocampus 67 Affy Mouse 430 2.0 45,101 4,927 5,520
GN281 Hypothalamus 46 Affy Mouse Gene 1.0 ST 34,760 1,759 4,230
GN375 Neocortex 43 Illumina Mouse WG-6 v2 45,281 2,614 4,120
GN156 Nucleus accumbens 34 Affy Mouse 430 2.0 45,101 3,648 4,624
GN135 Prefrontal cortex 27 Affy Mouse 430 2.0 45,101 2,256 4,392
GN399 Striatum 32 Affy Mouse 430 2.0 45,101 2,115 3,652
GN228 Ventral tegmental area 35 Affy Mouse 430 2.0 45,101 3,156 3,629
GN381 Midbrain 37 Agilent SurePrint G3 GE 55,681 6,526 7,258
GN302 Retina 73 Illumina Mouse WG-6 v2 45,281 3,833 6,941
*

Cis eQTLs defined as LOD > 3 and within ±5 Mb of parent gene. Trans eQTLs defined as LOD > 3 and more than 10 Mb from parent gene.