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. 2014 Nov 6;5(11):e1511. doi: 10.1038/cddis.2014.469

Table 2. Differential expression of known transcriptional targets of ATF4 (except those listed in the Table 1) from the lists of genes upregulated by mitochondrial ETC complex III inhibition in the absence of p53 activation (presented in Tables S1 and S2). HCT116 cells were treated with myxothiazol for 5 h (M5), 13 h (M13), 17 h (M17) and for 13 h in the presence of uridine (MU13).

# Gene symbol Ensemble ID amRNA fold changes Ref
 
 
 
M5
M13
M17
MU13
 
Amino acid transporters
1 Slc7a11 ENSG00000151012 2.41 NC 0.24 4.76  
2 SLC7A1 ENSG00000139514 1.78 0.67 NC 1.94  
3 SLC6A9 ENSG00000196517 2.97 NC NC 3.12 10
4 Slc38a2 ENSG00000134294 1.90 0.49 0.46 1.425  
5 SLC1A5 ENSG00000105281 1.69 1.27 NC 1.88  
6 SLC7A5 ENSG00000103257 1.81 1.89 NC 2.72  
               
Aminoacyl-tRNA synthetases
7 AARS ENSG00000090861 1.86 NC 0.60 1.98  
8 mars ENSG00000166986 1.53 NC NC 1.87  
9 SARS ENSG00000031698 1.78 NC 0.77 2.10 10
10 Gars ENSG00000106105 2.03 NC 0.71 1.62  
11 Yars ENSG00000134684 1.62 NC NC 1.71  
12 eprs ENSG00000136628 1.43 NC NC 1.29  
               
Other ATF4 targets
13 FGF19 ENSG00000162344 1.97 NC NC 1.97 27
14 ddit4 ENSG00000168209 4.36 NC NC 1.95  
15 JDP2 ENSG00000140044 2.67 NC NC 2.44  
16 CTH ENSG00000116761 1.38 NC NC 1.45  
17 Eif1 ENSG00000173812 2.06 0.66 NC 1.41 10
18 EIF4EBP1 ENSG00000187840 1.35 0.78 NC 1.41  
19 STC2 ENSG00000113739 2.63 NC 0.74 2.1  
20 GCLC ENSG00000001084 1.72 NC NC 1.51 28
21 Psat1 ENSG00000135069 2.5 NC 0.66 2.37  
22 ANK2 ENSG00000145362 1.93 NC NC 2.06  
23 Klf4 ENSG00000136826 2.05 NC 0.66 1.45  
24 RHBDD1 ENSG00000144468 1.36 0.56 NC 1,41  
25 Xpot ENSG00000184575 1.52 NC 0.64 1.55 10
26 FAM129A ENSG00000135842 2.59 1.95 1.4 3.37  
27 GPT2 ENSG00000166123 1.59 1.34 NC 1.94  
28 Arhgef2 ENSG00000116584 1.83 1.58 NC 2.10  
29 Mid1ip1 ENSG00000165175 1.33 1.25 NC 1.72  
30 Gtpbp2 ENSG00000172432 2.15 1.30 NC 2.05  

Abbreviation: NC, no change.

a

Fold change in mRNA levels according to mRNA-seq data is presented (FDR<0.05).