Table 2. Differential expression of known transcriptional targets of ATF4 (except those listed in the Table 1) from the lists of genes upregulated by mitochondrial ETC complex III inhibition in the absence of p53 activation (presented in Tables S1 and S2). HCT116 cells were treated with myxothiazol for 5 h (M5), 13 h (M13), 17 h (M17) and for 13 h in the presence of uridine (MU13).
# | Gene symbol | Ensemble ID | amRNA fold changes | Ref | |||
---|---|---|---|---|---|---|---|
|
|
|
M5 |
M13 |
M17 |
MU13 |
|
Amino acid transporters | |||||||
1 | Slc7a11 | ENSG00000151012 | 2.41 | NC | 0.24 | 4.76 | |
2 | SLC7A1 | ENSG00000139514 | 1.78 | 0.67 | NC | 1.94 | |
3 | SLC6A9 | ENSG00000196517 | 2.97 | NC | NC | 3.12 | 10 |
4 | Slc38a2 | ENSG00000134294 | 1.90 | 0.49 | 0.46 | 1.425 | |
5 | SLC1A5 | ENSG00000105281 | 1.69 | 1.27 | NC | 1.88 | |
6 | SLC7A5 | ENSG00000103257 | 1.81 | 1.89 | NC | 2.72 | |
Aminoacyl-tRNA synthetases | |||||||
7 | AARS | ENSG00000090861 | 1.86 | NC | 0.60 | 1.98 | |
8 | mars | ENSG00000166986 | 1.53 | NC | NC | 1.87 | |
9 | SARS | ENSG00000031698 | 1.78 | NC | 0.77 | 2.10 | 10 |
10 | Gars | ENSG00000106105 | 2.03 | NC | 0.71 | 1.62 | |
11 | Yars | ENSG00000134684 | 1.62 | NC | NC | 1.71 | |
12 | eprs | ENSG00000136628 | 1.43 | NC | NC | 1.29 | |
Other ATF4 targets | |||||||
13 | FGF19 | ENSG00000162344 | 1.97 | NC | NC | 1.97 | 27 |
14 | ddit4 | ENSG00000168209 | 4.36 | NC | NC | 1.95 | |
15 | JDP2 | ENSG00000140044 | 2.67 | NC | NC | 2.44 | |
16 | CTH | ENSG00000116761 | 1.38 | NC | NC | 1.45 | |
17 | Eif1 | ENSG00000173812 | 2.06 | 0.66 | NC | 1.41 | 10 |
18 | EIF4EBP1 | ENSG00000187840 | 1.35 | 0.78 | NC | 1.41 | |
19 | STC2 | ENSG00000113739 | 2.63 | NC | 0.74 | 2.1 | |
20 | GCLC | ENSG00000001084 | 1.72 | NC | NC | 1.51 | 28 |
21 | Psat1 | ENSG00000135069 | 2.5 | NC | 0.66 | 2.37 | |
22 | ANK2 | ENSG00000145362 | 1.93 | NC | NC | 2.06 | |
23 | Klf4 | ENSG00000136826 | 2.05 | NC | 0.66 | 1.45 | |
24 | RHBDD1 | ENSG00000144468 | 1.36 | 0.56 | NC | 1,41 | |
25 | Xpot | ENSG00000184575 | 1.52 | NC | 0.64 | 1.55 | 10 |
26 | FAM129A | ENSG00000135842 | 2.59 | 1.95 | 1.4 | 3.37 | |
27 | GPT2 | ENSG00000166123 | 1.59 | 1.34 | NC | 1.94 | |
28 | Arhgef2 | ENSG00000116584 | 1.83 | 1.58 | NC | 2.10 | |
29 | Mid1ip1 | ENSG00000165175 | 1.33 | 1.25 | NC | 1.72 | |
30 | Gtpbp2 | ENSG00000172432 | 2.15 | 1.30 | NC | 2.05 |
Abbreviation: NC, no change.
Fold change in mRNA levels according to mRNA-seq data is presented (FDR<0.05).