. Author manuscript; available in PMC: 2014 Dec 10.

Published in final edited form as: J Proteome Res. 2012 Nov 8;11(12):6080–6101. doi: 10.1021/pr300736v

Table 5. Comparison of Experimental Locations with GO CC.

GO CC annotation found^a
	GO CC annotation
data set unique^b	M	M+N	N	other^c	NA^d	sum
{m}	50	10	17	86	0	163
{m&n}	61	19	140	111	0	331
{n}	13	10	*200*	55	0	278

	GO CC annotation
data set multiple^b	M	M+N	N	other^c	NA^d	sum
{m}	49	13	49	123	0	234
{m&n}	10	l	7	17	0	35
{*m&n*}	0	5	25	21	0	51
{*m&n*}	64	23	132	142	0	361
{n}	18	10	*257*	97	0	382
sum	265	91	827	652	0	1835

GO CC annotation not found^e
	GO CC annotation
data set unique^b	M	M+N	N	other^c	NA^d	sum
{m}	8	0	1	13	31	53
{m&n}	8	1	26	15	34	84
{n}	0	0	51	12	49	112

	GO CC annotation
data set multiple^b	M	M+N	N	other^c	NA^d	sum
{m}	3	1	6	20	37	67
{m&n}	5	1	5	4	5	20
{m&n}	3	0	11	3	6	23
{m&n}	3	3	20	21	20	67
{n}	2	2	34	13	85	136
sum	32	8	154	101	267	562
sum all proteins	297	99	981	753	267	2397

Proteins (1835) for which at least one protein in the MS protein sequence group had a GO CC annotation.

Proteins for which there was a unique MS protein sequence are indicated by bold. Proteins for which the MS protein sequence group included multiple sequences are indicated by italics.

Proteins which had GO CC annotations to other locations, but not to M and/or N.

Proteins that had no GO CC annotation at the gene level.

Proteins (562) for which there was no sequence in the MS protein sequence group with GO CC annotation. For 267 of these proteins, there was no GO CC annotation at the gene level; 295 of these proteins had a GO CC annotation for a sequence from the same gene that was not contained in the MS protein sequence group.