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. 2014 Jul 25;68(10):2901–2916. doi: 10.1111/evo.12483

Table 2.

Results of general linear mixed effects models (LMEMs) assessing whether results of the neutrality tests (D*, F*, FS, D, and R2, analyzed separately) were explained by reproductive mode and/or habitat type

Response Explanatory (fixed/random) MCMCmean /Variance HPD(±) /SD LR χ2 P
D* Asexual aquatic (intercept) −0.27 −1.41, 0.95 - 0.63
Sexual −0.64 −1.75, 0.51 - 0.25
Limnoterrestrial −0.63 −1.86, 0.52 - 0.28
Morphospecies identity 0 7.13 × 10−7 0 0
Sample size 1.68 1.3 13.05 0
Dataset 0.12 0.35 0.084 0
Residual 0.48 0.69
F* Asexual aquatic (intercept) −0.27 −1.47, 0.96 - 0.65
Sexual −0.68 −1.86, 0.48 - 0.24
Limnoterrestrial −0.64 −1.87, 0.62 - 0.3
Morphospecies identity 2.80 × 10−11 5.29 × 10−6 0 0
Sample size 1.68 1.3 11.68 0
Dataset 0.14 0.37 0.056 0
Residual 0.54 0.74
FS Asexual aquatic (intercept) −6.66 −14.09, 0.8 - 0.088
Sexual −2.94 −9.96, 3.65 - 0.39
Limnoterrestrial −0.41 −8.23, 6.65 - 0.91
Morphospecies identity 0 0 0 0
Sample size 228.38 15.11 158.42 0
Dataset 0.48 0.69 2.58 0
Residual 0.72 0.85
D Asexual aquatic (intercept) 0.011 −0.9, 0.84 - 0.97
Sexual −0.59 −1.47, 0.35 - 0.19
Limnoterrestrial −0.66 −1.64, 0.3 - 0.16
Morphospecies identity 3.21 × 10−28 1.79 × 10−14 0 0
Sample size 0 0 0 0
Dataset 0.24 0.49 0.22 0
Residual 0.56 0.75
R2 Asexual aquatic (intercept) 0.37 0.18, 0.56 - 0.001
Sexual −0.17 −0.36, 0.029 - 0.089
Limnoterrestrial −0.1 −0.27, 0.069 - 0.25
Morphospecies identity 0 0 0 0
Sample size 0.015 0.12 8.27 0
Dataset 2.22 × 10−12 1.49 × 10−6 0 0
Residual 0.14 0.38

Reproductive mode and habitat type were included as fixed effects (bold), whereas morphospecies identity, sample size (no. of haplotypes per GMYC species), and the focal dataset were included as random effects (italics). P values of fixed effects on the HPD intervals obtained from Markov Chain Monte Carlo (MCMC) sampling and P values of random effects are based on likelihood ratio tests (LR χ2).