Table 3.
Evaluation results on the whole, abstract, and full paper collections from the training set of BioNLP-ST 2011 GE task
| Whole | Abstract | Full | |||||||
|---|---|---|---|---|---|---|---|---|---|
| P | R | F | P | R | F | P | R | F | |
| Whole set | |||||||||
| Simple event | 92.40 | 67.16 | 77.78 | 93.11 | 66.87 | 77.84 | 89.36 | 68.44 | 77.52 |
| Gene_expression | 92.27 | 69.18 | 79.07 | 93.01 | 68.82 | 79.11 | 89.86 | 70.43 | 78.96 |
| Transcription | 92.43 | 55.54 | 69.39 | 92.88 | 55.67 | 69.61 | 89.66 | 54.74 | 67.97 |
| Protein_catabolism | 91.01 | 71.05 | 79.80 | 93.10 | 71.05 | 80.60 | – | ||
| Phosphorylation | 97.42 | 77.44 | 86.29 | 97.78 | 76.74 | 85.99 | 95.00 | 82.61 | 88.37 |
| Localization | 90.43 | 70.03 | 78.94 | 91.24 | 70.46 | 79.52 | 76.92 | 62.50 | 68.97 |
| Binding | 90.83 | 50.77 | 65.14 | 90.76 | 50.68 | 65.04 | 91.43 | 51.61 | 65.98 |
| Total | 92.08 | 63.10 | 74.88 | 92.60 | 62.57 | 74.68 | 89.61 | 65.83 | 75.90 |
| Subset with selected triggers | |||||||||
| Simple event | 92.29 | 79.08 | 85.18 | 92.98 | 78.92 | 85.38 | 89.36 | 79.79 | 84.31 |
| Gene_expression | 92.27 | 79.85 | 85.61 | 93.01 | 79.25 | 85.58 | 89.86 | 81.94 | 85.71 |
| Transcription | 92.00 | 76.52 | 83.55 | 92.37 | 77.93 | 84.54 | 89.66 | 68.42 | 77.61 |
| Protein_catabolism | 91.01 | 77.14 | 83.51 | 93.10 | 77.14 | 84.38 | – | ||
| Phosphorylation | 97.42 | 81.62 | 88.82 | 97.78 | 81.48 | 88.89 | 95.00 | 82.61 | 88.37 |
| Localization | 90.04 | 77.04 | 83.03 | 90.83 | 77.65 | 83.72 | 76.92 | 66.67 | 71.43 |
| Binding | 90.25 | 70.94 | 79.44 | 90.11 | 70.47 | 79.09 | 91.43 | 75.29 | 82.58 |
| Total | 91.88 | 77.32 | 83.97 | 92.35 | 76.95 | 83.95 | 89.61 | 79.22 | 84.09 |
Performance is reported in terms of (P)recision/(R)ecall/(F)-score.