Table 4.
Evaluation results on the whole, abstract, and full paper collections from the development set of BioNLP-ST 2011 GE task
| Whole | Abstract | Full | |||||||
|---|---|---|---|---|---|---|---|---|---|
| P | R | F | P | R | F | P | R | F | |
| Whole set | |||||||||
| Simple event | 92.06 | 63.42 | 75.10 | 92.04 | 65.61 | 76.61 | 92.08 | 61.05 | 73.42 |
| Gene_expression | 92.28 | 64.77 | 76.12 | 91.01 | 66.75 | 77.02 | 93.61 | 62.88 | 75.23 |
| Transcription | 89.13 | 49.40 | 63.57 | 94.55 | 57.78 | 71.72 | 81.08 | 39.47 | 53.10 |
| Protein_catabolism | 94.12 | 69.57 | 80.00 | 93.75 | 71.43 | 81.08 | 100.00 | 50.00 | 66.67 |
| Phosphorylation | 98.77 | 71.43 | 82.90 | 96.77 | 62.50 | 75.95 | 100.00 | 78.13 | 87.72 |
| Localization | 84.75 | 66.67 | 74.63 | 91.49 | 70.49 | 79.63 | 58.33 | 50.00 | 53.85 |
| Binding | 91.51 | 47.12 | 62.20 | 86.96 | 42.94 | 57.49 | 98.98 | 54.80 | 70.55 |
| Total | 91.92 | 58.46 | 71.47 | 90.65 | 57.62 | 70.46 | 93.53 | 59.53 | 72.76 |
| Subset with selected triggers | |||||||||
| Simple event | 91.17 | 78.33 | 84.27 | 91.10 | 78.74 | 84.47 | 91.26 | 77.86 | 84.03 |
| Gene_expression | 91.18 | 80.78 | 85.66 | 89.93 | 82.51 | 86.06 | 92.48 | 79.10 | 85.27 |
| Transcription | 89.13 | 71.30 | 79.23 | 94.55 | 73.24 | 82.54 | 81.08 | 68.18 | 74.07 |
| Protein_catabolism | 94.12 | 72.73 | 82.05 | 93.75 | 71.43 | 81.08 | 100.00 | 100.00 | 100.00 |
| Phosphorylation | 98.77 | 74.77 | 85.11 | 96.77 | 65.22 | 77.92 | 100.00 | 81.97 | 90.09 |
| Localization | 83.05 | 75.38 | 79.03 | 89.36 | 79.25 | 84.00 | 58.33 | 58.33 | 58.33 |
| Binding | 90.73 | 61.84 | 73.55 | 85.71 | 57.02 | 68.49 | 98.98 | 70.29 | 82.20 |
| Total | 91.06 | 73.52 | 81.36 | 89.63 | 71.60 | 79.61 | 92.89 | 76.01 | 83.61 |
Performance is reported in terms of (P)recision/(R)ecall/(F)-score.