Table 1.
Comparisons of A/mallard/Shanghai/SH-9/2013(H5N8) with isolates in GenBank of highest nucleotide and amino acid identity (%)*
| Gene | Site | Nucleotide sequence isolate with the highest homology | Homology (%) | Site | Amino acid sequence isolate with the highest homology | Homology (%) |
|---|---|---|---|---|---|---|
| PB2 | 14-2293 | A/environment/Jiangxi/28/2009(H11N9) | 99 | 1-759 | A/environment/Jiangxi/28/2009(H11N9) | 99 |
| PB1 | 25-2298 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 | 1-757 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 |
| PA | 25-2175 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 | 1-716 | A/duck/Eastern China/1111/2011(H5N2) | 99 |
| HA | 29-1732 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 | 1-568 | A/duck/Jiangsu/k1203/2010(H5N8) | 98 |
| NP | 46-1542 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 | 1-499 | A/goose/Eastern China/1112/2011(H5N2) | 99 |
| NA | 21-1433 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 | 1-471 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 |
| M | 26-1007 | A/duck/Jiangsu/k1203/2010(H5N8) | 99 | 1-252 | A/duck/Jiangsu/k1203/2010(H5N8)** | 99 |
| NS | 27-864 | A/duck/Hunan/S11643/2012(H4N9) | 98 | 1-230 | A/duck/Hunan/S11547/2012(H4N9)*** | 96 |
*
Comparisons were performed by using the Blast search tool.
**
Amino acid sequence of M1 protein was compared.
***
Amino acid sequence of NS1 protein was compared.