Table 1.

Schizophrenia-associated differentially methylated positions in the prefrontal cortex

Probe ID	Genomic position (hg19)	Gene	Gene region	P -value	FDR	Mean SZ	Mean control	Beta difference
cg26173173	chr8:144642813	GSDMD	Body	1.16E-07	0.03	0.83	0.79	0.04
cg24803255	chr13:114807060	RASA3	Body	1.25E-07	0.03	0.56	0.65	−0.09
cg00903099	chr7:154862441	HTR5A	TSS200	2.40E-07	0.03	0.09	0.12	−0.02
cg08171022	chr11:70185278	PPFIA1	Body	2.85E-07	0.03	0.48	0.53	−0.05
cg02857643	chr17:48696108	CACNA1G	Body	1.63E-06	0.1	0.87	0.92	−0.05
cg00236305	chr2:1796076	MYT1L	Body	1.75E-06	0.1	0.67	0.73	−0.06
cg14966346	chr14:104152124	KLC1	Body	2.51E-06	0.1	0.72	0.77	−0.05
cg13079528	chr7:4027346	SDK1	Body	2.75E-06	0.1	0.71	0.79	−0.08
cg14429765	chr8:6492531	MCPH1	Body	2.79E-06	0.1	0.79	0.76	0.03
cg08602214	chr8:22864392	RHOBTB2	Body	2.87E-06	0.1	0.69	0.75	−0.07
cg19735533	chr2:241196887	-	-	2.94E-06	0.1	0.76	0.81	−0.06
cg09507608	chr22:29873338	-	-	2.95E-06	0.1	0.56	0.62	−0.06
cg23844013	chr1:57383752	C8A	3' UTR	3.20E-06	0.1	0.82	0.79	0.03
cg26578910	chr19:47204096	PRKD2	Body	3.47E-06	0.1	0.67	0.71	−0.04
cg21847368	chr13:113744010	MCF2L	Body	3.70E-06	0.1	0.80	0.84	−0.03
cg03607729	chr16:25138698	LCMT1	Body	4.19E-06	0.1	0.70	0.75	−0.04
cg10248981	chr10:126157948	LHPP	Body	4.32E-06	0.1	0.55	0.63	−0.07
cg03445663	chr2:242170236	HDLBP	Body	4.59E-06	0.1	0.51	0.59	−0.08
cg15079231	chr3:42572745	VIPR1	Body	4.93E-06	0.1	0.76	0.80	−0.04
cg21341878	chr4:2278462	ZFYVE28	Body	5.14E-06	0.1	0.75	0.81	−0.05
cg04922803	chr12:104444418	GLT8D2	TSS1500	5.19E-06	0.1	0.68	0.62	0.06
cg18857062	chr6:43276478	CRIP3	Body	5.29E-06	0.1	0.21	0.26	−0.04

Listed are all probes associated with schizophrenia (SZ) with FDR ≤0.1. The 100 top-ranked DMPs are listed in Table S4 in Additional file 1.