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Comparison to the 31 S. pneumoniae Mugsy benchmark
| Method | Time | Core (bp) | LCBs |
|---|---|---|---|
| Parsnp | 0.3 min | 1,428,407 | 1,171 |
| Mugsy | 100 min | 1,590,820 | 2,394 |
| Mauve | 377 min | 1,568,715 | 1,366 |
| NUCmer + TBA | 80 min | 1,457,575 | 27,075 |
Time: Method runtime from input to output. Core: Size of the aligned core genome measured in base pairs. LCBs: Number of locally colinear blocks in the alignment.
