Table 3.
Number and proportion of SNPs dropped and remaining at different genotyping call rate threshold after merged data is filtered at info score >0.7.
| Threshold | SNPs dropped at threshold | Proportion of SNPs dropped at threshold | SNPs remaining at threshold | Proportion of SNPs remaining at threshold |
|---|---|---|---|---|
| ADULT DNA SAMPLES | ||||
| 0.95 | 1650764 | 0.1494 | 9400761 | 0.8506 |
| 0.98 | 3609986 | 0.3267 | 7441539 | 0.6733 |
| 0.99 | 5619475 | 0.5085 | 5432050 | 0.4915 |
| PEDIATRIC DNA SAMPLES | ||||
| 0.95 | 2165777 | 0.1275 | 14810393 | 0.8724 |
| 0.98 | 4983111 | 0.2935 | 11993059 | 0.7065 |
| 0.99 | 7692022 | 0.4531 | 9284148 | 0.5469 |