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. 2014 Jul 14;16(1):143–154. doi: 10.1093/biostatistics/kxu034

Table 3.

Type-I error of proposed tests under additive and multiplicative “null” models

Inline graphic
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Model Type-I error rate 0.05 0.01 0.05 0.01 0.05 0.01 0.05 0.01
Multiplicative Inline graphic 0.054 0.012 0.058 0.012 0.050 0.013 0.046 0.008
Inline graphic 0.053 0.013 0.058 0.013 0.055 0.010 0.046 0.008
Additive Inline graphic 0.050 0.009 0.047 0.005 0.053 0.011 0.054 0.013
Inline graphic 0.051 0.008 0.042 0.007 0.049 0.011 0.055 0.011

The proposed method is evaluated using Inline graphic or Inline graphic with the corresponding risk regions being defined by the combinations of evenly placed grid points at various upper and lower quintiles of the risk distribution. Results are based on Inline graphic simulated datasets each involving a total of Inline graphic subjects with equal number of cases and controls. In each simulation, data are generated with models involving Inline graphic SNPs Inline graphic.